Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,028,634 – 12,028,735 |
Length | 101 |
Max. P | 0.744595 |
Location | 12,028,634 – 12,028,735 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 72.56 |
Mean single sequence MFE | -17.92 |
Consensus MFE | -8.00 |
Energy contribution | -7.76 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.28 |
Mean z-score | -1.82 |
Structure conservation index | 0.45 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12028634 101 - 22407834 -CAUAUAAUUCAUUGGAAAAACAAGCAGAAUACUAAGCUAUAUAACAGAGCUAGUUAGCUAGAACUAGUACAGCUCAAAAGCUAAUUAGUUUUUAUAAUUAC -......((((.(((......)))...)))).........(((((..(((((((((((((.((.((.....)).))...))))))))))))))))))..... ( -18.30) >DroSec_CAF1 19835 100 - 1 -AAUAUAAUUCAUUGGAAAAACGAGCGGAAUACUAAGCUAUAUAUCAGAGCUAGUUAGCUAGAACUAGUACAUCUCAAAAGCUAAUUAGUU-UAAUAAUUCU -......((((.(((......)))...))))................((((((((((((((((.........)))....))))))))))))-)......... ( -17.30) >DroSim_CAF1 20055 87 - 1 -AAUAUAAUUCAUUGGAAAAACGAGCGGAAUAA-------------AGAGCUAGUUAGCUAGAACUAGUACCGCUCAAAAGCUAAUUAGUU-UAAUAAUUAU -.....((((.(((((......((((((.((..-------------((..((((....))))..)).)).)))))).....))))).))))-.......... ( -18.20) >DroEre_CAF1 20458 89 - 1 CCAUAUAACUCGUUGGGAAACCGAGCC------------AUAUAUCAUAUCUUGUUAGGUAGAGCUAGUACUGCCCAAAAGCUAAUUAGUU-CAAUAAUUGC ..((((..(((...((....)))))..------------))))....(((((....)))))((((((((...((......))..)))))))-)......... ( -18.10) >DroYak_CAF1 20918 80 - 1 --------CGCAUUGGAAAACCAAGCA------------GUAUAUCAGAUAUAGUUGGGUAGAACUAGUACUGCUCCACAGCUAAUUAGUU-U-AUAACUAU --------.((.((((....)))))).------------...........(((((((....((((((((...(((....)))..)))))))-)-.))))))) ( -17.70) >consensus _AAUAUAAUUCAUUGGAAAAACGAGCAGAAUA_______AUAUAUCAGAGCUAGUUAGCUAGAACUAGUACAGCUCAAAAGCUAAUUAGUU_UAAUAAUUAU ............(((......)))...........................((((((.....(((((((...((......))..)))))))....)))))). ( -8.00 = -7.76 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:20 2006