Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,024,370 – 12,024,471 |
Length | 101 |
Max. P | 0.962261 |
Location | 12,024,370 – 12,024,471 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 79.40 |
Mean single sequence MFE | -32.98 |
Consensus MFE | -15.15 |
Energy contribution | -14.70 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.24 |
Mean z-score | -3.23 |
Structure conservation index | 0.46 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962261 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12024370 101 + 22407834 AUUACCAGUUCAAGCUGGUUAAGU-UUUCGGUCACGGACGUUUGGAGCCAGUUUUGGCUAGAUUCUAGUAUCCGUCCGUCGAGCGAACAUGUAUGUAUUAUC ...((((((....)))))).....-.((((.(((((((((.....((((......)))).(((......)))))))))).)).))))............... ( -31.50) >DroSec_CAF1 15759 101 + 1 AUUACCAGUUCAAGCUGGUUACGU-UUUCGGUCACGGACGUUUGGAGCCAGUUUUGACUAGAUUCUAGUGUCCGUCCGUCGAGCGAAAACGUAUGUAUUAUC ...((((((....))))))(((((-(((((.(((((((((.(((((((.(((....))).).))))))....))))))).)).))))))))))......... ( -39.70) >DroSim_CAF1 15903 101 + 1 AUUACCAGUUCAAGCUGGUUACGU-UUUCGGUCACGGACGUUUGGAGCCAGUUUUGGCUAGAUUCUAGUGUCCGUCCGUCGAGCGAAAACGUAUGUAUUAUC ...((((((....))))))(((((-(((((.(((((((((.....((((......)))).(((......)))))))))).)).))))))))))......... ( -41.80) >DroEre_CAF1 16174 89 + 1 ACUACCAGUUCAAGCUGGUUGGGU-UUUCGGUCAUGGACGUUUGGAGCCAGUUUAAGCUGGAUUCUAGAGUCCGUCG--------AAC----AUGUAUUACC .(.((((((....)))))).)(((-...((.((((((((.((((((((((((....))))).))))))))))))).)--------)..----.))....))) ( -32.30) >DroYak_CAF1 16560 95 + 1 AUUACCAGUUCAAGCUGGUUACGU-UUUCGGUCAUGGACGUUUGGAGCCAGUUUAAGCUGGAUUCUAGAGCCCGUCG--AGAGCGAAC----AUGUAUUAUA ...((((((....))))))(((((-.((((.((.(.((((((((((((((((....))))).)))))))...)))).--))).)))).----)))))..... ( -35.30) >DroAna_CAF1 18254 83 + 1 UUUACCAGUUCAAGCUGGUAAAAUUUUUUGGUCAUGGACGU-UGGAGCCAGUUAUAGCUAGAUUU-AG-------------ACAUAAC----AUAUAUUUAC (((((((((....)))))))))............(((.(..-....))))(((((..(((....)-))-------------..)))))----.......... ( -17.30) >consensus AUUACCAGUUCAAGCUGGUUACGU_UUUCGGUCACGGACGUUUGGAGCCAGUUUUAGCUAGAUUCUAGUGUCCGUCC__CGAGCGAAC____AUGUAUUAUC ......((((.(((((((((......((((....)))).......))))))))).))))........................................... (-15.15 = -14.70 + -0.44)
Location | 12,024,370 – 12,024,471 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 79.40 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -12.11 |
Energy contribution | -12.34 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.23 |
Mean z-score | -2.73 |
Structure conservation index | 0.46 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12024370 101 - 22407834 GAUAAUACAUACAUGUUCGCUCGACGGACGGAUACUAGAAUCUAGCCAAAACUGGCUCCAAACGUCCGUGACCGAAA-ACUUAACCAGCUUGAACUGGUAAU ...............((((.((.((((((((((......))).(((((....))))).....))))))))).)))).-.....(((((......)))))... ( -29.20) >DroSec_CAF1 15759 101 - 1 GAUAAUACAUACGUUUUCGCUCGACGGACGGACACUAGAAUCUAGUCAAAACUGGCUCCAAACGUCCGUGACCGAAA-ACGUAACCAGCUUGAACUGGUAAU .........((((((((((.((.(((((((...(((((...)))))......((....))..))))))))).)))))-)))))(((((......)))))... ( -35.50) >DroSim_CAF1 15903 101 - 1 GAUAAUACAUACGUUUUCGCUCGACGGACGGACACUAGAAUCUAGCCAAAACUGGCUCCAAACGUCCGUGACCGAAA-ACGUAACCAGCUUGAACUGGUAAU .........((((((((((.((.(((((((((........)).(((((....))))).....))))))))).)))))-)))))(((((......)))))... ( -37.50) >DroEre_CAF1 16174 89 - 1 GGUAAUACAU----GUU--------CGACGGACUCUAGAAUCCAGCUUAAACUGGCUCCAAACGUCCAUGACCGAAA-ACCCAACCAGCUUGAACUGGUAGU (((....(((----(..--------((..(((........)))((((......)))).....))..)))))))....-.....(((((......)))))... ( -19.50) >DroYak_CAF1 16560 95 - 1 UAUAAUACAU----GUUCGCUCU--CGACGGGCUCUAGAAUCCAGCUUAAACUGGCUCCAAACGUCCAUGACCGAAA-ACGUAACCAGCUUGAACUGGUAAU .....(((..----.((((.((.--.((((.......((..((((......)))).))....))))...)).)))).-..)))(((((......)))))... ( -20.40) >DroAna_CAF1 18254 83 - 1 GUAAAUAUAU----GUUAUGU-------------CU-AAAUCUAGCUAUAACUGGCUCCA-ACGUCCAUGACCAAAAAAUUUUACCAGCUUGAACUGGUAAA ..........----((((((.-------------..-......(((((....)))))...-.....))))))........((((((((......)))))))) ( -15.73) >consensus GAUAAUACAU____GUUCGCUCG__GGACGGACACUAGAAUCUAGCCAAAACUGGCUCCAAACGUCCAUGACCGAAA_ACGUAACCAGCUUGAACUGGUAAU .............................((((........((((......))))........))))................(((((......)))))... (-12.11 = -12.34 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:18 2006