Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,238,425 – 1,238,581 |
Length | 156 |
Max. P | 0.835609 |
Location | 1,238,425 – 1,238,543 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.96 |
Mean single sequence MFE | -40.20 |
Consensus MFE | -36.59 |
Energy contribution | -37.15 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.53 |
Structure conservation index | 0.91 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632417 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1238425 118 + 22407834 UGCAUCUGGUCAAAGUUUGCGUGCUGCAAGAGUGUUGCACGCCUCUCGAGGCAAUCAGGCAUGGAUCC--GAAGGUCCUGGAGCUGCCGCUCCUCAUACAUAUAUAAUUAUCCUUGGCCU .......((((((.(((((.((((.(((....))).))))((((....))))...)))))..(((((.--...))))).(((((....)))))....................)))))). ( -38.10) >DroSec_CAF1 15899 118 + 1 UGCAUCUGGCCAAAGUUUGCGUGCUGCAAGAGUGUUGCACGCCUUUCGAGACAAUCAGGCAGGGAUCC--GAAGGUCCUGGAGCUGCCGCUCCUCAUACAUAUAUAAUUAUUCUUGGCCU .......((((((.((((((((((.(((....))).)))))).....((.....)))))).((((((.--...))))))(((((....)))))....................)))))). ( -38.20) >DroSim_CAF1 12062 118 + 1 UGCAUCUGGCCAAAGUUUGCGUGCUGCAAGAGUGUUGCACGCCUCUCGAGGCAAUCAGGCAGGGAUCC--GAAGGUCCUGGAGCUGCCGCUCCUCAUACAUAUAUAAUUAUUCUUGGCCU .......((((((.(((((.((((.(((....))).))))((((....))))...))))).((((((.--...))))))(((((....)))))....................)))))). ( -42.20) >DroYak_CAF1 11944 120 + 1 UGCAUCUGGCCAAAGUUUGCGUGCUGCAGGAGUGUUGCACGCCUCUCGAGGCAAUCAGGCUGGGAUCCUGGAAGGUCCUACCGCUGCCGCUCCUCAUACAUAUAUAAUUAUUCUUGGCCU .......((((((.(....)(((.((.(((((((..((..((((....)))).....((.(((((((......)))))))))))...))))))))))))..............)))))). ( -42.30) >consensus UGCAUCUGGCCAAAGUUUGCGUGCUGCAAGAGUGUUGCACGCCUCUCGAGGCAAUCAGGCAGGGAUCC__GAAGGUCCUGGAGCUGCCGCUCCUCAUACAUAUAUAAUUAUUCUUGGCCU .......((((((.....((((((.(((....))).)))))).....((((......((((((((((......))))).....)))))...))))..................)))))). (-36.59 = -37.15 + 0.56)
Location | 1,238,425 – 1,238,543 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.96 |
Mean single sequence MFE | -38.77 |
Consensus MFE | -34.94 |
Energy contribution | -35.50 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.44 |
Structure conservation index | 0.90 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523492 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1238425 118 - 22407834 AGGCCAAGGAUAAUUAUAUAUGUAUGAGGAGCGGCAGCUCCAGGACCUUC--GGAUCCAUGCCUGAUUGCCUCGAGAGGCGUGCAACACUCUUGCAGCACGCAAACUUUGACCAGAUGCA .((.(((((..................(((((....))))).(((.(...--.).))).(((......((((....))))((((..((....))..)))))))..))))).))....... ( -36.50) >DroSec_CAF1 15899 118 - 1 AGGCCAAGAAUAAUUAUAUAUGUAUGAGGAGCGGCAGCUCCAGGACCUUC--GGAUCCCUGCCUGAUUGUCUCGAAAGGCGUGCAACACUCUUGCAGCACGCAAACUUUGGCCAGAUGCA .(((((((((((((((...........(((((....))))).(((.(...--.).))).....))))))).)).....((((((..((....))..)))))).....))))))....... ( -39.80) >DroSim_CAF1 12062 118 - 1 AGGCCAAGAAUAAUUAUAUAUGUAUGAGGAGCGGCAGCUCCAGGACCUUC--GGAUCCCUGCCUGAUUGCCUCGAGAGGCGUGCAACACUCUUGCAGCACGCAAACUUUGGCCAGAUGCA .(((((((................(((((..((((((.....(((.(...--.).)))))))).)....)))))....((((((..((....))..))))))....)))))))....... ( -40.40) >DroYak_CAF1 11944 120 - 1 AGGCCAAGAAUAAUUAUAUAUGUAUGAGGAGCGGCAGCGGUAGGACCUUCCAGGAUCCCAGCCUGAUUGCCUCGAGAGGCGUGCAACACUCCUGCAGCACGCAAACUUUGGCCAGAUGCA .(((((((................(((((.((....))(((.(((((.....)).)))..)))......)))))....((((((..((....))..))))))....)))))))....... ( -38.40) >consensus AGGCCAAGAAUAAUUAUAUAUGUAUGAGGAGCGGCAGCUCCAGGACCUUC__GGAUCCCUGCCUGAUUGCCUCGAGAGGCGUGCAACACUCUUGCAGCACGCAAACUUUGGCCAGAUGCA .(((((((................(((((..((((((.....(((((.....)).)))))))).)....)))))....((((((..((....))..))))))....)))))))....... (-34.94 = -35.50 + 0.56)
Location | 1,238,465 – 1,238,581 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.98 |
Mean single sequence MFE | -42.30 |
Consensus MFE | -27.85 |
Energy contribution | -29.60 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.56 |
Structure conservation index | 0.66 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835609 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1238465 116 + 22407834 GCCUCUCGAGGCAAUCAGGCAUGGAUCC--GAAGGUCCUGGAGCUGCCGCUCCUCAUACAUAUAUAAUUAUCCUUGGCCUGGCCAAGGGCUCCUGUUCCUCCUUCGACCUCGCC--UGGC ((((....))))..((((((..((...(--(((((....(((((....))))).................((((((((...))))))))...........)))))).))..)))--))). ( -45.20) >DroSec_CAF1 15939 113 + 1 GCCUUUCGAGACAAUCAGGCAGGGAUCC--GAAGGUCCUGGAGCUGCCGCUCCUCAUACAUAUAUAAUUAUUCUUGGCCUGGCCAAGGCCUGU---UCCUCCUUCGACCUCGCC--UGGC ..............((((((..((...(--(((((....(((((....)))))......................(((((.....)))))...---....)))))).))..)))--))). ( -38.90) >DroSim_CAF1 12102 113 + 1 GCCUCUCGAGGCAAUCAGGCAGGGAUCC--GAAGGUCCUGGAGCUGCCGCUCCUCAUACAUAUAUAAUUAUUCUUGGCCUGGCCAAGGGCUCC---UGUUCCUUCGACCUCGCC--UGGC ((((....))))..((((((..((...(--(((((..(.((((((..............(((......))).((((((...))))))))))))---.)..)))))).))..)))--))). ( -46.70) >DroYak_CAF1 11984 111 + 1 GCCUCUCGAGGCAAUCAGGCUGGGAUCCUGGAAGGUCCUACCGCUGCCGCUCCUCAUACAUAUAUAAUUAUUCUUGGCCUGGG------CGGC---UGCUCCUUCGACCUCGUCCUCGGC (((...((((((.....((.(((((((......)))))))))((.(((((((.(((...(((......)))...)))...)))------))))---.))......).))))).....))) ( -38.40) >consensus GCCUCUCGAGGCAAUCAGGCAGGGAUCC__GAAGGUCCUGGAGCUGCCGCUCCUCAUACAUAUAUAAUUAUUCUUGGCCUGGCCAAGGGCUCC___UCCUCCUUCGACCUCGCC__UGGC (((...((((((...(((((.((((((......))))))(((((....))))).......................)))))((.....))...............).))))).....))) (-27.85 = -29.60 + 1.75)
Location | 1,238,465 – 1,238,581 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.98 |
Mean single sequence MFE | -42.40 |
Consensus MFE | -31.67 |
Energy contribution | -31.80 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.08 |
Mean z-score | -1.56 |
Structure conservation index | 0.75 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624883 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1238465 116 - 22407834 GCCA--GGCGAGGUCGAAGGAGGAACAGGAGCCCUUGGCCAGGCCAAGGAUAAUUAUAUAUGUAUGAGGAGCGGCAGCUCCAGGACCUUC--GGAUCCAUGCCUGAUUGCCUCGAGAGGC ..((--((((.(((((((((............(((((((...)))))))..................(((((....)))))....)))))--))..)).))))))...((((....)))) ( -47.10) >DroSec_CAF1 15939 113 - 1 GCCA--GGCGAGGUCGAAGGAGGA---ACAGGCCUUGGCCAGGCCAAGAAUAAUUAUAUAUGUAUGAGGAGCGGCAGCUCCAGGACCUUC--GGAUCCCUGCCUGAUUGUCUCGAAAGGC ..((--((((.(((((((((....---...(((((.....)))))......................(((((....)))))....)))))--))..)).))))))......((....)). ( -41.60) >DroSim_CAF1 12102 113 - 1 GCCA--GGCGAGGUCGAAGGAACA---GGAGCCCUUGGCCAGGCCAAGAAUAAUUAUAUAUGUAUGAGGAGCGGCAGCUCCAGGACCUUC--GGAUCCCUGCCUGAUUGCCUCGAGAGGC ..((--((((.(((((((((..(.---......((((((...))))))...................(((((....))))).)..)))))--))..)).))))))...((((....)))) ( -44.60) >DroYak_CAF1 11984 111 - 1 GCCGAGGACGAGGUCGAAGGAGCA---GCCG------CCCAGGCCAAGAAUAAUUAUAUAUGUAUGAGGAGCGGCAGCGGUAGGACCUUCCAGGAUCCCAGCCUGAUUGCCUCGAGAGGC (((.....((((((.(((((..(.---((((------(....(((.....(..(((((....)))))..)..))).))))).)..)))))((((.......))))...))))))...))) ( -36.30) >consensus GCCA__GGCGAGGUCGAAGGAGCA___GCAGCCCUUGGCCAGGCCAAGAAUAAUUAUAUAUGUAUGAGGAGCGGCAGCUCCAGGACCUUC__GGAUCCCUGCCUGAUUGCCUCGAGAGGC (((.....(((((((....))..................(((((.......................(((((....))))).(((((.....)).)))..)))))....)))))...))) (-31.67 = -31.80 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:47 2006