Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,016,490 – 12,016,582 |
Length | 92 |
Max. P | 0.627796 |
Location | 12,016,490 – 12,016,582 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 81.86 |
Mean single sequence MFE | -27.07 |
Consensus MFE | -16.27 |
Energy contribution | -15.88 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.30 |
Mean z-score | -2.07 |
Structure conservation index | 0.60 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12016490 92 + 22407834 CGUUUGGAGCAUAGACUGAUGAGUUCGCUGAUGUGGGGAAAGUAUUGCAACAGCAAAAAGUUUUCCCCAUAGAGAGCUAGAAA---GGACAAAGA .((((.((((.((......)).))))(((..(((((((((((..((((....))))....)))))))))))...)))......---))))..... ( -26.20) >DroPse_CAF1 15910 92 + 1 CGCUUGGAGCACAGGCCAAUCAGCUCACUGAUGUGCGGGAAAUACUGCAGAAGGAGAAAGUUUUCCCCAUAGAGAGCUGGAAC---AUACAGACA .(((((.....)))))...(((((((.(((.(.(((((......))))).).(((((....)))))...))).)))))))...---......... ( -29.30) >DroEre_CAF1 8361 92 + 1 CGCUUGGAGCACAGACUAAUGAGUUCGCUGAUGUGGGGGAAGUACUGCAGCAGCAAAAAGUUUUCCCCAUAGAGAGCUAUAAA---GGACACGGA .((((.((((.((......)).)))).....(((((((((((...(((....))).....)))))))))))..))))......---......... ( -24.80) >DroYak_CAF1 8621 92 + 1 CGUUUGGAGCACAGACUAAUGAGUUCGCUGAUGUGCGGGAAGUACUGCAACAGCAGAAAGUUUUCCCCAUAGAGAGCUAUAAG---CGACAAAGA ((((((((((.((......)).))))(((..((((.((((((..((((....)))).....))))))))))...)))..))))---))....... ( -27.80) >DroAna_CAF1 10170 94 + 1 CGCUUGGAGCAGAGAGCGAUCAACUCGCUGAUGUGCGGGAAAUACUGCAGUAGGAGAAAGUUUUCGCCGUAGAGAGCUGGAGGAGAGGAGAAAG- (((((........))))).((..(((.(((...(((((......))))).))).....(((((((......)))))))......)))..))...- ( -25.00) >DroPer_CAF1 15771 92 + 1 CGCUUGGAGCACAGGCCAAUCAGCUCACUGAUGUGCGGGAAAUACUGCAGAAGGAGAAAGUUUUCCCCAUAGAGAGCUGGAAC---AUACAGACA .(((((.....)))))...(((((((.(((.(.(((((......))))).).(((((....)))))...))).)))))))...---......... ( -29.30) >consensus CGCUUGGAGCACAGACCAAUCAGCUCGCUGAUGUGCGGGAAAUACUGCAGCAGCAGAAAGUUUUCCCCAUAGAGAGCUAGAAA___GGACAAAGA .((((.((((.((......)).)))).....((((.((((((.(((............)))))))))))))..)))).................. (-16.27 = -15.88 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:13 2006