Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,013,971 – 12,014,068 |
Length | 97 |
Max. P | 0.768434 |
Location | 12,013,971 – 12,014,068 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 81.73 |
Mean single sequence MFE | -30.46 |
Consensus MFE | -21.09 |
Energy contribution | -22.62 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.08 |
Mean z-score | -1.86 |
Structure conservation index | 0.69 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768434 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12013971 97 - 22407834 --UUCGCAUCGCCUUGAGCUGGGCCAAUGAACCUGCUGGGAGCAGCAGCAAACGCAGCAGCACAGCAGCAACAUCCCAGCAACAACGGACCUUGCAUCC --...(((..((((((.((((((...(((...((((((...((.((.((....)).)).)).))))))...)))))))))..))).)).)..))).... ( -33.90) >DroSec_CAF1 5427 97 - 1 --UUCGCAUCGCCUUGAGCUGGGCCAAUGAACCUGCUGGGAGCAGCAGCAAACGCAGCAGCACAGCAGCAACAUCCCAGCAACAACGGACCUUGCAUCC --...(((..((((((.((((((...(((...((((((...((.((.((....)).)).)).))))))...)))))))))..))).)).)..))).... ( -33.90) >DroSim_CAF1 5477 97 - 1 --UUCGCAUCGCCUUGAGCUGGGCCAAUGAACCUGCUGGGAGCAGCAGCAAACGCAGCAGCACAGCAGCAACAUCCCAGCAACAACGGACCUUGCAUCC --...(((..((((((.((((((...(((...((((((...((.((.((....)).)).)).))))))...)))))))))..))).)).)..))).... ( -33.90) >DroEre_CAF1 5802 86 - 1 --UUCGCAUCGCCUUGAGCUGGGCCAAUGAACCUGCUGGGAGCAGCAGCAAACGCA-----------GCAACAUCCCAGCAACAGCGGACAUUGCAUCC --(((((...((((......)))).........((((((((...((.((....)).-----------))....))))))))...))))).......... ( -29.60) >DroAna_CAF1 5739 77 - 1 CGCUCGCCUUGCCUUGAGCCAGGCCAAUGAACUUGCUGGGAGCAACAGCAG---CA---GC----------------AGAAGCAACGGACGAUGCAUCC .(((((((..((((......))))...((...((((((...((....))..---))---))----------------))...))..)).))).)).... ( -21.00) >consensus __UUCGCAUCGCCUUGAGCUGGGCCAAUGAACCUGCUGGGAGCAGCAGCAAACGCAGCAGCACAGCAGCAACAUCCCAGCAACAACGGACCUUGCAUCC .....(((...(((((.((((((.........((((((....)))))).....((.((......)).)).....))))))..))).))....))).... (-21.09 = -22.62 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:12 2006