Locus 4196

Sequence ID 2L_DroMel_CAF1
Location 12,012,312 – 12,012,412
Length 100
Max. P 0.993750
window6635

overview

Window 5

Location 12,012,312 – 12,012,412
Length 100
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 74.35
Mean single sequence MFE -51.92
Consensus MFE -35.42
Energy contribution -34.48
Covariance contribution -0.94
Combinations/Pair 1.36
Mean z-score -2.58
Structure conservation index 0.68
SVM decision value 2.42
SVM RNA-class probability 0.993750
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12012312 100 + 22407834
GCGUCGA-GAGCCAGGGUUGCCAGUCCAGCGCGCGGAAUGGGGGCGCAACAGGUGGUCGUCGAACUGACGGCCGCACGGCAGCCCUGGUCGGGCGUUCCAC
(((((..-((.(((((((((((......((((.(.......).)))).....(((((((((.....)))))))))..))))))))))))).)))))..... ( -55.80)
>DroPse_CAF1 12055 101 + 1
GCGCUGGGAAGCUAGGGUUGUCAGACCACCUGUUGUGAUCGUCGGCAGUCCGGUGGCCGCCACCAAAACCGCACUCUGACAACCCUGGACAACCAUUGCGC
(((((((....((((((((((((((....((((((.......))))))...(((((...)))))..........))))))))))))))....)))..)))) ( -47.20)
>DroSec_CAF1 3818 100 + 1
GCGUCGA-GAGCCAGGGUUGCCAGGCCAGCGCGCGGGAUCGAGGCGCAACAGGUGGUCGUCGCACUGACGGCCGCACGGCAGCCCUGGUCGGGCGUUCCAC
(((((..-((.(((((((((((......((((.((....))..)))).....(((((((((.....)))))))))..))))))))))))).)))))..... ( -55.60)
>DroSim_CAF1 3820 100 + 1
GCGUCGA-GAGCCAGGGUUGCCAGGCCAGCGCGCGGGAUCGAGGCGCAACAGGUGGUCGUCGCACUGACGGCCGCACGGCAGCCCUGGUCGGGCGUUCCAC
(((((..-((.(((((((((((......((((.((....))..)))).....(((((((((.....)))))))))..))))))))))))).)))))..... ( -55.60)
>DroEre_CAF1 4327 100 + 1
GCGUCGA-GAGCCAGGGUAGCCAGGCCAGCGCACGGGAUCGAGGCGCAACAGGUGGCCGCCGCACCGACGGCCGCACGGCAACCCUGGUCGGGCGUUCCAC
(((((..-((.(((((((.(((......((((.((....))..)))).....(((((((.((...)).)))))))..))).))))))))).)))))..... ( -50.10)
>DroPer_CAF1 11867 101 + 1
GCGCUGGGAAGCUAGGGUUGUCAGACCACCUGUUGUGAUCGUCGGCAGUCCGGUGGCCGCCACCAAAACCGCACUCUGACAACCCUGGACAACCAUUGCGC
(((((((....((((((((((((((....((((((.......))))))...(((((...)))))..........))))))))))))))....)))..)))) ( -47.20)
>consensus
GCGUCGA_GAGCCAGGGUUGCCAGGCCAGCGCGCGGGAUCGAGGCGCAACAGGUGGCCGCCGCACUGACGGCCGCACGGCAACCCUGGUCGGGCGUUCCAC
(((((.....((((((((((((........((((.........)))).....(((((((.........)))))))..))))))))))))..)))))..... (-35.42 = -34.48 +  -0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:11 2006