Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,008,999 – 12,009,110 |
Length | 111 |
Max. P | 0.930935 |
Location | 12,008,999 – 12,009,110 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 71.75 |
Mean single sequence MFE | -34.75 |
Consensus MFE | -18.42 |
Energy contribution | -19.40 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.29 |
Mean z-score | -1.65 |
Structure conservation index | 0.53 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.785692 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12008999 111 + 22407834 AGAUUGUACUGCUGAUACUCUUCACCUGGUUGUGGGCCACUCCGUUCUCCGUGCUGCCAUUGUUCCAGAUCUGGGGACGUUACCAGCCGGGUGAGAA-GUGAAUUCAUGAAG ...............((((..(((((((((((.(((((((..........)))..)))...(((((.......)))))....))))))))))))..)-)))........... ( -34.00) >DroVir_CAF1 583 103 + 1 AGAUCAUUAUGUGCAUCAUAUUCACCUGGCUGUGGGCAACGCCGUUUUCGGUGCUGCCCCUCUUCCAGAUCUGGGGUCGCUACCAGCCAGGUAAC---------UCUUCCCA .((....((((.....)))).))(((((((((.(((((.(((((....))))).)))))...(((((....))))).......)))))))))...---------........ ( -39.30) >DroEre_CAF1 556 111 + 1 AAAUUGUGCUGCUAAUACUCUUCACCUGGCUGUGGGCCGCUCCGUUCUCCGUGCUGCCAUUGUUCCAGAUCUGGGGACGUUACCAGCCGGGUAAGAA-GUGGAUACAUCAGG ....(((((..((.....((((.(((((((((.((((.((..((.....)).)).)))...(((((.......)))))....)))))))))))))))-)..).))))..... ( -38.30) >DroWil_CAF1 556 108 + 1 AAAUUCUUUUGUGUAUUAUAUUUACCUGGCUAUGGGCCACACCCUUCUCGGUAUUGCCAUUCUUUCAGAUAUGGGGGCGUUAUCAGCCUGGUAAGCAAUUG----CAUAGAA .......((((((((.....((((((.((((..(((.....))).....((((.((((.(((..........))))))).)))))))).))))))....))----)))))). ( -31.10) >DroMoj_CAF1 579 107 + 1 AGAUAAUUUUGUGUAUUAUUUUCACCUGGAUGUGGGCAACGCCCUUCUCGGUGCUGCCGCUCUUUCAGAUCUGGGGUCGCUAUCUGCCAGGUGAGAU-GU----UCAUGAAA ......(((..((.((...((((((((((.....((((.((((......)))).))))((..(..((....))..)..))......)))))))))).-))----.))..))) ( -36.30) >DroAna_CAF1 557 104 + 1 AGAUAGUCCUGUUGAUCAUCUUCACCUGGCUGUGGGCCACCCCCUUUUCGGUGCUACCUUUAUUCCAAAUUUGGGGACGUUAUCAGCCCGGUAAGAA-GCGGGUA------- .......((((((.....((((.(((.(((((.((..((((........))))...))....(((((....))))).......))))).))))))))-)))))..------- ( -29.50) >consensus AGAUUGUUCUGUGGAUAAUCUUCACCUGGCUGUGGGCCACGCCCUUCUCGGUGCUGCCAUUCUUCCAGAUCUGGGGACGUUACCAGCCAGGUAAGAA_GUG___UCAUCAAA ..................((((.(((((((((..(((...(((......((.....))......(((....)))))).)))..)))))))))))))................ (-18.42 = -19.40 + 0.98)
Location | 12,008,999 – 12,009,110 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 71.75 |
Mean single sequence MFE | -31.62 |
Consensus MFE | -20.87 |
Energy contribution | -20.48 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.40 |
Mean z-score | -1.50 |
Structure conservation index | 0.66 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12008999 111 - 22407834 CUUCAUGAAUUCAC-UUCUCACCCGGCUGGUAACGUCCCCAGAUCUGGAACAAUGGCAGCACGGAGAACGGAGUGGCCCACAACCAGGUGAAGAGUAUCAGCAGUACAAUCU ((((.......(((-(((...((((((((.((..((..(((....))).))..)).)))).))).)...))))))(((........))))))).((((.....))))..... ( -28.00) >DroVir_CAF1 583 103 - 1 UGGGAAGA---------GUUACCUGGCUGGUAGCGACCCCAGAUCUGGAAGAGGGGCAGCACCGAAAACGGCGUUGCCCACAGCCAGGUGAAUAUGAUGCACAUAAUGAUCU ..(((...---------.(((((((((((.........(((....))).....(((((((.(((....))).))))))).))))))))))).((((.....))))....))) ( -42.50) >DroEre_CAF1 556 111 - 1 CCUGAUGUAUCCAC-UUCUUACCCGGCUGGUAACGUCCCCAGAUCUGGAACAAUGGCAGCACGGAGAACGGAGCGGCCCACAGCCAGGUGAAGAGUAUUAGCAGCACAAUUU ..((.(((....((-(..(((((.(((((.....((..(((....))).))...(((.((.((.....))..)).)))..))))).)))))..)))....))).))...... ( -33.60) >DroWil_CAF1 556 108 - 1 UUCUAUG----CAAUUGCUUACCAGGCUGAUAACGCCCCCAUAUCUGAAAGAAUGGCAAUACCGAGAAGGGUGUGGCCCAUAGCCAGGUAAAUAUAAUACACAAAAGAAUUU ((((..(----(....))(((((.(((((.....(((.((((.((.....))))))..(((((......))))))))...))))).)))))..............))))... ( -25.30) >DroMoj_CAF1 579 107 - 1 UUUCAUGA----AC-AUCUCACCUGGCAGAUAGCGACCCCAGAUCUGAAAGAGCGGCAGCACCGAGAAGGGCGUUGCCCACAUCCAGGUGAAAAUAAUACACAAAAUUAUCU ........----..-...(((((((((((((...........))))).....(.((((((.((......)).)))))))....))))))))..................... ( -30.00) >DroAna_CAF1 557 104 - 1 -------UACCCGC-UUCUUACCGGGCUGAUAACGUCCCCAAAUUUGGAAUAAAGGUAGCACCGAAAAGGGGGUGGCCCACAGCCAGGUGAAGAUGAUCAACAGGACUAUCU -------.......-...(((((.(((((....(..((((...(((((.............)))))..))))..).....))))).)))))(((((.((.....)).))))) ( -30.32) >consensus UUUCAUGA___CAC_UUCUUACCCGGCUGAUAACGUCCCCAGAUCUGGAAGAAUGGCAGCACCGAGAACGGAGUGGCCCACAGCCAGGUGAAGAUAAUAAACAGAACAAUCU ..................(((((.(((((.........(((....)))......(((.((.((.....))..)).)))..))))).)))))..................... (-20.87 = -20.48 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:07 2006