Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,005,391 – 12,005,510 |
Length | 119 |
Max. P | 0.994907 |
Location | 12,005,391 – 12,005,510 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.03 |
Mean single sequence MFE | -41.44 |
Consensus MFE | -35.28 |
Energy contribution | -35.84 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.15 |
Mean z-score | -2.37 |
Structure conservation index | 0.85 |
SVM decision value | 2.52 |
SVM RNA-class probability | 0.994907 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12005391 119 - 22407834 GCAUUUUAGAGCGUCGCCAGUGCCAGGGUCAGUUGAACGUUAACUGGCCCUUUCGUUUGGAGUGUAUUUGGUUCAAGGCUGUUCUCAUGGCCC-CCAGCCAUGAGCUCCACCAAGUUCAA (((((((((((((.(....)))).((((((((((((...))))))))))))....))))))))))(((((((....((.....((((((((..-...))))))))..))))))))).... ( -42.20) >DroSec_CAF1 6146 120 - 1 GCAUUUUAGAACGCCGCCAGUUCCAGGGUCAGUUGAACGUUAACUGGCCCUUUCAUUUGGAGCGUAUUUGGUUCAAGGCUGUUCUCAUGGUCCCCCAGCCAUGAGCUCCACCAAGUUAAA ((......((((((((((((((((((((((((((((...))))))))))).......)))))).....))))....))).))))(((((((......))))))))).............. ( -41.91) >DroSim_CAF1 5350 119 - 1 GCAUUUUAGAACGCCGCCUGUUCCAGGGUCAGUUGAACGUUAACUGGCCCUUUCGUUUGGAGCGUAUUUGGUUCAAGGCUGUUCUCAUGGUCC-ACAGCCAUGAGCUCCACCAAGUUCAA ........((((((((..((((((((((((((((((...))))))))))).......)))))))....))))....((..(..((((((((..-...))))))))..)..))..)))).. ( -42.51) >DroEre_CAF1 5399 119 - 1 GUAUUUUAGAGCGUAGCCAGUGCCAGGGUCACUUUGACCUUAACUGGCCCUUUCGCUUGGAGCGUAUUUGGUUCAAGGCUGUUCUCAUGGCCC-GCAGCCAUGAGCUCCAUCAAGUUCAA ........(((((..((((((...((((((.....)))))).)))))).....)))))(((((.....(((((...((((((....)))))).-..)))))...)))))........... ( -44.50) >DroYak_CAF1 5498 112 - 1 GUAUUUUAGAGCGUCGCCAGUGCCAGGGCCAGUUUGACGUUAACUGGCCCUUUCGUUUGGAGCGUAUAUAGUUCAAGGCUGUUCUCAUGGCCC-CCA-------GCUCCAUCAAGUUCAA ........((((...((((..(((((((((((((.......))))))))))........((((.......))))..)))........))))..-...-------))))............ ( -36.10) >consensus GCAUUUUAGAGCGUCGCCAGUGCCAGGGUCAGUUGAACGUUAACUGGCCCUUUCGUUUGGAGCGUAUUUGGUUCAAGGCUGUUCUCAUGGCCC_CCAGCCAUGAGCUCCACCAAGUUCAA ........((((............((((((((((((...))))))))))))......((((((.....(((((...((((((....))))))....)))))...))))))....)))).. (-35.28 = -35.84 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:03 2006