Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,004,980 – 12,005,072 |
Length | 92 |
Max. P | 0.999947 |
Location | 12,004,980 – 12,005,072 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 90.20 |
Mean single sequence MFE | -44.66 |
Consensus MFE | -39.88 |
Energy contribution | -40.32 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -4.20 |
Structure conservation index | 0.89 |
SVM decision value | 4.76 |
SVM RNA-class probability | 0.999947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12004980 92 + 22407834 GCUCCAAGAUUCCGCCGGCAAUUCUGCCGGCGAUGGCCCCCAAAUGGCCAGUGGAGC--CGUUGACCAGCGAGCGUAUGGUCAGCUAUUGAUGU ((((((......((((((((....)))))))).(((((.......))))).))))))--.((((((((((....)).))))))))......... ( -46.60) >DroSec_CAF1 5760 94 + 1 GCUCCAAGAUUCCGCUGGCAAUUCUGCCGGCGAUGGCCCCCAAAUGGCCAGUGGAGCCCCGUUGACCAGCGAGCGUAUGGUCAGCUAUUGAUGU ((((((......((((((((....)))))))).(((((.......))))).))))))...((((((((((....)).))))))))......... ( -44.40) >DroSim_CAF1 4964 94 + 1 GCUCCAAGAUUCCGCCGGCGAUUCUGCCGGCGAUGGCCCCCAAAUGGCCAGUGGAGCCCCAUUGACCAGCGAGCGUAUGGUCAGCUAUUGAUGU ((((((......((((((((....)))))))).(((((.......))))).))))))....(((((((((....)).))))))).......... ( -42.20) >DroEre_CAF1 4962 87 + 1 GCUCCAAGAGUCCGCCGGCUAUUCUGCCGGCGUUGGCC-CCAAAUGGCCAGUGGAGC--UGUUGACCAG----CGUAUGGUCAGCCAUUGAUGU ((((((......(((((((......)))))))((((((-......))))))))))))--.((((((((.----....))))))))......... ( -46.00) >DroYak_CAF1 5080 87 + 1 GCUCCAAGAGUCCGCCGGCUAUUCUGCCGGCAAUGGGC-UCAAAUGGCCAGUGGAGC--AGUUGACCAG----CGUAUGGUCAGCUAUUGAUGU ((((((.((((((((((((......))))))...))))-))..........))))))--(((((((((.----....)))))))))........ ( -44.10) >consensus GCUCCAAGAUUCCGCCGGCAAUUCUGCCGGCGAUGGCCCCCAAAUGGCCAGUGGAGC__CGUUGACCAGCGAGCGUAUGGUCAGCUAUUGAUGU ((((((......(((((((......))))))).(((((.......))))).))))))...((((((((.........))))))))......... (-39.88 = -40.32 + 0.44)
Location | 12,004,980 – 12,005,072 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 90.20 |
Mean single sequence MFE | -38.06 |
Consensus MFE | -35.76 |
Energy contribution | -35.84 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -2.71 |
Structure conservation index | 0.94 |
SVM decision value | 4.54 |
SVM RNA-class probability | 0.999918 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12004980 92 - 22407834 ACAUCAAUAGCUGACCAUACGCUCGCUGGUCAACG--GCUCCACUGGCCAUUUGGGGGCCAUCGCCGGCAGAAUUGCCGGCGGAAUCUUGGAGC .........(.((((((.........)))))).).--((((((.(((((.......)))))((((((((......)))))))).....)))))) ( -40.20) >DroSec_CAF1 5760 94 - 1 ACAUCAAUAGCUGACCAUACGCUCGCUGGUCAACGGGGCUCCACUGGCCAUUUGGGGGCCAUCGCCGGCAGAAUUGCCAGCGGAAUCUUGGAGC .........(.((((((.........)))))).)...((((((.(((((.......)))))((((.(((......))).)))).....)))))) ( -34.10) >DroSim_CAF1 4964 94 - 1 ACAUCAAUAGCUGACCAUACGCUCGCUGGUCAAUGGGGCUCCACUGGCCAUUUGGGGGCCAUCGCCGGCAGAAUCGCCGGCGGAAUCUUGGAGC ...........((((((.........)))))).....((((((.(((((.......)))))((((((((......)))))))).....)))))) ( -39.50) >DroEre_CAF1 4962 87 - 1 ACAUCAAUGGCUGACCAUACG----CUGGUCAACA--GCUCCACUGGCCAUUUGG-GGCCAACGCCGGCAGAAUAGCCGGCGGACUCUUGGAGC .......((..((((((....----.)))))).))--((((((.(((((......-))))).(((((((......)))))))......)))))) ( -41.80) >DroYak_CAF1 5080 87 - 1 ACAUCAAUAGCUGACCAUACG----CUGGUCAACU--GCUCCACUGGCCAUUUGA-GCCCAUUGCCGGCAGAAUAGCCGGCGGACUCUUGGAGC ........((.((((((....----.)))))).))--((((((..((((....).-)))..((((((((......)))))))).....)))))) ( -34.70) >consensus ACAUCAAUAGCUGACCAUACGCUCGCUGGUCAACG__GCUCCACUGGCCAUUUGGGGGCCAUCGCCGGCAGAAUAGCCGGCGGAAUCUUGGAGC .........(.((((((.........)))))).)...((((((.(((((.......))))).(((((((......)))))))......)))))) (-35.76 = -35.84 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:02 2006