Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,004,042 – 12,004,155 |
Length | 113 |
Max. P | 0.990517 |
Location | 12,004,042 – 12,004,155 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 86.30 |
Mean single sequence MFE | -35.44 |
Consensus MFE | -30.14 |
Energy contribution | -32.64 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.06 |
Mean z-score | -2.40 |
Structure conservation index | 0.85 |
SVM decision value | 2.22 |
SVM RNA-class probability | 0.990517 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12004042 113 + 22407834 AUUGACUGGUUCGGCGAGCGGCUAACAGAGGGCGCCACCUUGAUGGUGAGGGGUUCCAUACAUAUGAAUAUGUAUGUAAAAACCCAGGGCGAAAAAGUCAUGAAAACCCAUUG ..(((((..((((.(..(((.((......)).)))((((.....))))..(((((.((((((((....))))))))....)))))..).))))..)))))............. ( -37.90) >DroSec_CAF1 4810 105 + 1 AUUGACUGGUUCGCCGAGCGGCUAACAGAGGGCGCCACCUUGCCGGUGAGGGGUUCCAUACAUA--------UAUGUAAAAACCCAGGGCGAAAAAGUCAUGAAAACCCAUUG ..(((((..((((((..(((.((......)).)))((((.....))))..(((((...((((..--------..))))..)))))..))))))..)))))............. ( -36.60) >DroSim_CAF1 4010 105 + 1 AUUGACUGGUUCGCCGAGCGGCUAACAGAGGGCGCCACCUUGCCGGUGAGGGGUUCCAUACAUA--------UAUGUAAAAACCCAGGGCGAAAAAGUCAUGAAAACCCAUUG ..(((((..((((((..(((.((......)).)))((((.....))))..(((((...((((..--------..))))..)))))..))))))..)))))............. ( -36.60) >DroEre_CAF1 4002 96 + 1 AUUGACUGGUUCGCCGAGCGGCCAACAGAGGGCGCCACCUACCUGGUGAGGGGUUC-----------------AUAUAAAAACCCAGGGCGAAAAUGUCAUGAAAACCCAUUG ..((((...((((((..(((.((......)).)))((((.....))))..(((((.-----------------.......)))))..))))))...))))............. ( -34.90) >DroYak_CAF1 4133 96 + 1 AUAGACUGGUUCGCCGAGCGGCCAACAGAGGGCGCCACCGUCGUGGUGAGGGGUUC-----------------AUAUAAAAACCUAGGGCGAAAAUGUCAUGAAAACCCAGUG ...(((...((((((..(((.((......)).)))((((.....))))..(((((.-----------------.......)))))..))))))...))).............. ( -31.20) >consensus AUUGACUGGUUCGCCGAGCGGCUAACAGAGGGCGCCACCUUGCUGGUGAGGGGUUCCAUACAUA________UAUGUAAAAACCCAGGGCGAAAAAGUCAUGAAAACCCAUUG ...((((..((((((..(((.((......)).)))((((.....))))..(((((...(((((((......)))))))..)))))..))))))..)))).............. (-30.14 = -32.64 + 2.50)
Location | 12,004,042 – 12,004,155 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 86.30 |
Mean single sequence MFE | -32.18 |
Consensus MFE | -24.04 |
Energy contribution | -27.54 |
Covariance contribution | 3.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.75 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12004042 113 - 22407834 CAAUGGGUUUUCAUGACUUUUUCGCCCUGGGUUUUUACAUACAUAUUCAUAUGUAUGGAACCCCUCACCAUCAAGGUGGCGCCCUCUGUUAGCCGCUCGCCGAACCAGUCAAU .............(((((..(((.....((((((...((((((((....))))))))))))))...........(((((((.(........).))).)))))))..))))).. ( -31.00) >DroSec_CAF1 4810 105 - 1 CAAUGGGUUUUCAUGACUUUUUCGCCCUGGGUUUUUACAUA--------UAUGUAUGGAACCCCUCACCGGCAAGGUGGCGCCCUCUGUUAGCCGCUCGGCGAACCAGUCAAU .............(((((..((((((..(((((((((((..--------..)))).)))))))...........((((((...........)))))).))))))..))))).. ( -33.40) >DroSim_CAF1 4010 105 - 1 CAAUGGGUUUUCAUGACUUUUUCGCCCUGGGUUUUUACAUA--------UAUGUAUGGAACCCCUCACCGGCAAGGUGGCGCCCUCUGUUAGCCGCUCGGCGAACCAGUCAAU .............(((((..((((((..(((((((((((..--------..)))).)))))))...........((((((...........)))))).))))))..))))).. ( -33.40) >DroEre_CAF1 4002 96 - 1 CAAUGGGUUUUCAUGACAUUUUCGCCCUGGGUUUUUAUAU-----------------GAACCCCUCACCAGGUAGGUGGCGCCCUCUGUUGGCCGCUCGGCGAACCAGUCAAU .............((((...((((((..((((((......-----------------))))))..((((.....))))(((.((......)).)))..))))))...)))).. ( -31.70) >DroYak_CAF1 4133 96 - 1 CACUGGGUUUUCAUGACAUUUUCGCCCUAGGUUUUUAUAU-----------------GAACCCCUCACCACGACGGUGGCGCCCUCUGUUGGCCGCUCGGCGAACCAGUCUAU .((((((((.....)))...((((((...(((((......-----------------)))))...((((.....))))(((.((......)).)))..))))))))))).... ( -31.40) >consensus CAAUGGGUUUUCAUGACUUUUUCGCCCUGGGUUUUUACAUA________UAUGUAUGGAACCCCUCACCAGCAAGGUGGCGCCCUCUGUUAGCCGCUCGGCGAACCAGUCAAU .............(((((..((((((..(((((((((((((........)))))).)))))))...........((((((...........)))))).))))))..))))).. (-24.04 = -27.54 + 3.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:00 2006