Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,981,130 – 11,981,230 |
Length | 100 |
Max. P | 0.671677 |
Location | 11,981,130 – 11,981,230 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 82.89 |
Mean single sequence MFE | -19.68 |
Consensus MFE | -15.64 |
Energy contribution | -17.00 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.05 |
Mean z-score | -1.64 |
Structure conservation index | 0.79 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11981130 100 + 22407834 AACUCAGAUCAAUGCCGCAAGGCAAUCUUCUC----UUACAUUUUUGCUACAUUUUAUGAGCACUUU-CCUAUCAC--------UUUCUUAGUCACAGCUACGGAUAAUAAGU .....(((....((((....))))....)))(----(((......((((.(((...)))))))....-........--------.(((.((((....)))).)))...)))). ( -16.40) >DroSec_CAF1 200527 100 + 1 AACUCAGAUCAAUGCCGCAAGGCAAUCUUCUC----UUACAUUUUUGCUACAUUUUAUGAGCACUUU-CCUAUCAC--------UUUCUUAGUCACAGCUAGGGAUAAUAAGC .....(((....((((....))))....)))(----(((......((((.(((...)))))))....-........--------.((((((((....))))))))...)))). ( -20.00) >DroSim_CAF1 166980 99 + 1 AACUCAGAUCAAUGCCGCAAGGCAAUCUUCUC----UUACAUUUUUGCUACAUUUUAUGAGCA-UUU-CCUAUCAC--------UUUCUUAGUCACGGCUAGGGAUAAUAAGC .....(((....((((....))))....)))(----(((......((((.(((...)))))))-...-........--------.((((((((....))))))))...)))). ( -21.60) >DroEre_CAF1 175106 107 + 1 UAUUCAGAUCAAUGCCGAAGGGCAACCUUCUUAAUAUAUUAUAUUUGCUGCAUUUCAUGAGCACUUUUCCUAUCAGUUUUCCUAUUUCUUAGUCACAGC------UAAUAAGG ((((.(((....((((....))))....))).)))).....((((.((((........(((.(((.........))).)))(((.....)))...))))------.))))... ( -17.10) >DroYak_CAF1 172185 100 + 1 AACUCAGUUCGAUGCCGAAAGGCAACCUUCUC----UAACAUUUUUGCUACAUUUUAUGAGCACUUU-CCCAUUAC--------UUUCUUGGUGACAGCCAGGGAUAAUAAGG ............((((....)))).((((...----.........((((.(((...)))))))....-........--------.((((((((....))))))))....)))) ( -23.30) >consensus AACUCAGAUCAAUGCCGCAAGGCAAUCUUCUC____UUACAUUUUUGCUACAUUUUAUGAGCACUUU_CCUAUCAC________UUUCUUAGUCACAGCUAGGGAUAAUAAGC .....(((....((((....))))....)))..............((((.(((...)))))))......................((((((((....))))))))........ (-15.64 = -17.00 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:52 2006