Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,980,796 – 11,980,890 |
Length | 94 |
Max. P | 0.916022 |
Location | 11,980,796 – 11,980,890 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 96.06 |
Mean single sequence MFE | -16.48 |
Consensus MFE | -15.94 |
Energy contribution | -15.30 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.21 |
Mean z-score | -1.32 |
Structure conservation index | 0.97 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916022 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11980796 94 - 22407834 GAGGACAAUCAUGGGAAAUCUUAUGUCUAAUGCAUAGGAAAAACUCAAAUAGAAAAUGAGAAUAAAAGUCAUUAAAGAUUGACUACUGUCAGGU ...((((....((((...((((((((.....))))))))....))))...................(((((........)))))..)))).... ( -18.40) >DroSec_CAF1 200197 94 - 1 GAGGACAAUCAUGGGAAAUUUCAUGUCUAAUGCAUAGGAAAAACUCAAAUAGAAAAUGAGAAUAAAAGUCAUUAAAGAUUGACUACUGUCAGGU ...((((....((((...((((((((.....)))).))))...))))...................(((((........)))))..)))).... ( -14.70) >DroSim_CAF1 166651 94 - 1 GAGGACAAUCAUGGGAAAUCUCAUGUCUAAUGCAUAGGAAAAACUCAAAUAGAAAAUGAGAAUAAAAGUCAUUAAAGAUUGACUACUGUCAGGU ...((((..((((((....))))))..................((((.........))))......(((((........)))))..)))).... ( -16.80) >DroEre_CAF1 174764 94 - 1 GAGGACAAUCAUGGGAAAUCUCAUGUCUAAUGCAUAGGAAAAACUCAAACACCAAAUGGGAAUAAAAGUCAUUAAAGAUUGACUACUGUCAGGU ...((((.((.((((...((..((((.....))))..))....))))....((....)))).....(((((........)))))..)))).... ( -16.50) >DroYak_CAF1 171831 94 - 1 GAGGACAAUCAUGGGAAAUCUCGUGUCUAAUGCAUAGGAAAAACUCAAAUACGAAAUGAGCAUAAAAGUCAUUAAAGAUUGACUACUGUCAGGU ...((((..((((((....))))))....((((...(......)((......)).....))))...(((((........)))))..)))).... ( -16.00) >consensus GAGGACAAUCAUGGGAAAUCUCAUGUCUAAUGCAUAGGAAAAACUCAAAUAGAAAAUGAGAAUAAAAGUCAUUAAAGAUUGACUACUGUCAGGU ...((((..((((((....))))))..................((((.........))))......(((((........)))))..)))).... (-15.94 = -15.30 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:51 2006