Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,977,452 – 11,977,576 |
Length | 124 |
Max. P | 0.530736 |
Location | 11,977,452 – 11,977,548 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 90.10 |
Mean single sequence MFE | -25.81 |
Consensus MFE | -21.26 |
Energy contribution | -20.90 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.15 |
Mean z-score | -1.30 |
Structure conservation index | 0.82 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11977452 96 + 22407834 ----ACUUUUUGGCCUGCGGUUACGGUUGGCC-----GCUGUCUAAGCAUUAAAUCAACCAGCAGCUGUAAAAUUACAGCAAAUGUUUAACCAACCCCUUUCGGG ----.....((((..(((((((..((....))-----(((.....)))........)))).)))((((((....))))))..........)))).(((....))) ( -25.20) >DroSec_CAF1 196873 95 + 1 ----ACUUUUUGGCCUGCGGUUACGGUUGGCC-----GCUGUCUAAGCAUUAAAUCAACCAGCAGCUGUAAAAUUACAGCAAAUGUUUAACUAACCCCUU-CGGG ----.......(((..(((((((....)))))-----)).)))((((((((....(.....)..((((((....)))))).)))))))).......((..-..)) ( -24.20) >DroSim_CAF1 163303 95 + 1 ----ACUUUUUGGCCUGCGGUUACGGUUGGCC-----GCUGUCUAAGCAUUAAAUCAACCAGCAGCUGUAAAAUUACAGCAAAUGUUUAACCAACCCCUU-CGGG ----.....((((..(((((((..((....))-----(((.....)))........)))).)))((((((....))))))..........))))..((..-..)) ( -25.30) >DroEre_CAF1 171319 98 + 1 UUCAGGUUUUUGGCCUGCGGUUACGGUUGGCC-----GCUGUCUAAGCAUUAAACCAACCAGCAGCUGUAAAAUUACGGCAAAUGUUUAACCAACCC-CG-CUGC ...((((.....))))((((....((((((..-----((((..................)))).((((((....))))))..........)))))))-))-)... ( -28.67) >DroYak_CAF1 168316 100 + 1 ----AGUUUUUGGCCUGCGGUUACGCUUGGCUGUCUAGCUGUCUAAGCAUUAAAUCAACCAGCAGCUGUAAAAUUACGGCAAAUGUUUAACCAACCCCCG-CGGC ----........(((.((((....(((.((.((....(((.....))).......)).))))).((((((....)))))).................)))-)))) ( -25.70) >consensus ____ACUUUUUGGCCUGCGGUUACGGUUGGCC_____GCUGUCUAAGCAUUAAAUCAACCAGCAGCUGUAAAAUUACAGCAAAUGUUUAACCAACCCCUU_CGGG ..................(((((.((((((.......(((.....)))......))))))....((((((....)))))).......)))))............. (-21.26 = -20.90 + -0.36)
Location | 11,977,480 – 11,977,576 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 84.08 |
Mean single sequence MFE | -27.93 |
Consensus MFE | -19.83 |
Energy contribution | -20.03 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.10 |
Mean z-score | -1.59 |
Structure conservation index | 0.71 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530736 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11977480 96 + 22407834 -----GCUGUCUAAGCAUUAAAUCAACCAGCAGCUGUAAAAUUACAGCAAAUGUUUAACCAACCCCUUUCGGGGG-G---AAAAUUGGGCAGGUG--------GGGCCAACUG -----(((.....)))..........(((.(.((((((....))))))...(((((((....(((((....))))-)---....)))))))).))--------)......... ( -28.30) >DroSec_CAF1 196901 97 + 1 -----GCUGUCUAAGCAUUAAAUCAACCAGCAGCUGUAAAAUUACAGCAAAUGUUUAACUAACCCCUU-CGGGGG-AAA-AAAAUUGGGCAGGUG--------GGGCCAACUG -----(((.....)))..........(((.(.((((((....))))))...(((((((....((((..-..))))-...-....)))))))).))--------)......... ( -28.60) >DroSim_CAF1 163331 98 + 1 -----GCUGUCUAAGCAUUAAAUCAACCAGCAGCUGUAAAAUUACAGCAAAUGUUUAACCAACCCCUU-CGGGGG-AAAAAAAAUUGGGCAGGUG--------GGGCCAACUG -----(((.....)))......((.(((.((.((((((....))))))..........((((((((..-..))))-........)))))).))).--------))........ ( -28.60) >DroEre_CAF1 171351 92 + 1 -----GCUGUCUAAGCAUUAAACCAACCAGCAGCUGUAAAAUUACGGCAAAUGUUUAACCAACCC-CG-CUGCGGGCCA-AAAAUUGGGGAGGUG--------GGGCG----- -----..((..((((((((....(.....)..((((((....)))))).))))))))..)).(((-((-((.....(((-.....)))...))))--------)))..----- ( -24.70) >DroYak_CAF1 168344 105 + 1 GUCUAGCUGUCUAAGCAUUAAAUCAACCAGCAGCUGUAAAAUUACGGCAAAUGUUUAACCAACCCCCG-CGGCGG-----AAAAUUGGGGAGGUGCUGUGGUGGGGCA--CUG .....(((.....))).............((.((((((....))))))..............((((((-(((((.-----.............)))))))).))))).--... ( -29.44) >consensus _____GCUGUCUAAGCAUUAAAUCAACCAGCAGCUGUAAAAUUACAGCAAAUGUUUAACCAACCCCUU_CGGGGG_A_A_AAAAUUGGGCAGGUG________GGGCCAACUG ........((((.........(((..((((..((((((....))))))..............((((.....)))).........))))...))).........))))...... (-19.83 = -20.03 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:48 2006