Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,237,175 – 1,237,293 |
Length | 118 |
Max. P | 0.556400 |
Location | 1,237,175 – 1,237,293 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.07 |
Mean single sequence MFE | -17.75 |
Consensus MFE | -14.95 |
Energy contribution | -15.20 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.84 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.556400 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1237175 118 - 22407834 AACAACUUUGCAACUCGCA--UGUUUUUGUCCCCAGUCAACUAUAAAAAGAAGCACAGGAGCGUAAAUAAUACAACAAGAAUAUAUGCACAUAAUAGUAAAUAAAUAUGAAAAUAUUGCA ........(((.....(((--(((((((((......................((......))(((.....))).))))))..))))))...............(((((....)))))))) ( -15.70) >DroSec_CAF1 14583 116 - 1 AACAACUUUGCAACUCGCA--UGUUUUUGUCCCCAGUCAACUAUAAAAAG--GCACAGGAGCGAAAAUAAUACAACAAGAAUAUAUGCACAUAAUAAUAAAUAAAUAUGAAAAUAUUGCA ........(((.....(((--((((((((..((..(((...........)--))...))..))))))))...(.....)......)))...............(((((....)))))))) ( -15.60) >DroSim_CAF1 10705 118 - 1 AACAACUUUGCAACUCGCAAAUGUUUUUGUCCCCAGUCAACUAUAAAAAG--GCACAGGAGCGUAAAUAAUACAACAAGAAUAUAUGCACAUAAUAAUAAAUAAAUAUGAAAAUAUUGCA ........(((.....(((.((((((((((((...(((...........)--))...)))..(((.....)))..))))))))).)))...............(((((....)))))))) ( -19.40) >DroYak_CAF1 10626 112 - 1 AG----UCCGCAACUCGCA--UGUUUUUGUCCCCAGUCAACUAUAAAAAG--GCACAGGAGCGUAAAUAAUACAACAAGAAUAUGUGCACAUAAUAAUAAAUAAAUAUGAAAAUAUUGCA ..----...((....((((--(((((((((((...(((...........)--))...)))..(((.....)))..))))))))))))................(((((....))))))). ( -20.30) >consensus AACAACUUUGCAACUCGCA__UGUUUUUGUCCCCAGUCAACUAUAAAAAG__GCACAGGAGCGUAAAUAAUACAACAAGAAUAUAUGCACAUAAUAAUAAAUAAAUAUGAAAAUAUUGCA .........((.....(((..(((((((((......................((......))(((.....))).)))))))))..)))...............(((((....))))))). (-14.95 = -15.20 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:40 2006