Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,974,882 – 11,974,996 |
Length | 114 |
Max. P | 0.500000 |
Location | 11,974,882 – 11,974,996 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 97.01 |
Mean single sequence MFE | -17.71 |
Consensus MFE | -17.19 |
Energy contribution | -17.23 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.06 |
Structure conservation index | 0.97 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11974882 114 - 22407834 UAAACGCGGCGAUUGUUGUUGUCUCCCCGCCGCUUCUCCUCCGCCCACUUUUUCUUUUUUAGAGUAAUUAAGAAAUCCUCUUUACGGUUCAGUUUCUCUCCCUCUUUCCGUAAU .....((((((................)))))).................((((((..(((...)))..))))))......((((((...((...........))..)))))). ( -18.69) >DroSec_CAF1 194365 113 - 1 UAAACGCGGCGAUUGUUGUUGUCUCCCCGCCGCUUCUCCUCCGCC-CCUUUUUCUUUUUUAGAGUAAUUAAGAAAUCCUCUUUACGGUUCAGUUUCUCUCCCUCUUUCCGUAAU .....((((((................))))))............-....((((((..(((...)))..))))))......((((((...((...........))..)))))). ( -18.69) >DroSim_CAF1 160749 114 - 1 UAAACGCGGUGAUUGUUGUUGUCUCCCCGCCGCUUCUCCUCCGCCCCCUUUUUCUUUUUUAGAGUAAUUAAGAAAUCCUCUUUACGGUUCAGUUUCUCUCCCUCUUUCCGUAAU .....((((((................)))))).................((((((..(((...)))..))))))......((((((...((...........))..)))))). ( -16.79) >DroEre_CAF1 168753 111 - 1 UAAACUCGGCGAUUGUUGUUGUCUCCCCGCCGCUUCUC---CGCCCCCUUUUUCUUUUUUAGAGUAAUUAAGAAAUCCUCUUUACGGUUCAGUUUCUCUCCCUCUUUCCGUAAU ...((((((((................))))((.....---.)).................))))................((((((...((...........))..)))))). ( -15.69) >DroYak_CAF1 165653 111 - 1 UAAACGCGGCGAUUGUUGUUGUCUCCCCGCCGCUUCUC---CGCCCCCUUUUUCUUUUUUAGAGUAAUUAAGAAAUCCUCUUUACGGUUCAGUUUCUCUCCCUCUUUCCGUAAU .....((((((................)))))).....---.........((((((..(((...)))..))))))......((((((...((...........))..)))))). ( -18.69) >consensus UAAACGCGGCGAUUGUUGUUGUCUCCCCGCCGCUUCUCCUCCGCCCCCUUUUUCUUUUUUAGAGUAAUUAAGAAAUCCUCUUUACGGUUCAGUUUCUCUCCCUCUUUCCGUAAU .....((((((................)))))).................((((((..(((...)))..))))))......((((((...((...........))..)))))). (-17.19 = -17.23 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:44 2006