Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,974,018 – 11,974,116 |
Length | 98 |
Max. P | 0.615476 |
Location | 11,974,018 – 11,974,116 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 87.85 |
Mean single sequence MFE | -17.14 |
Consensus MFE | -11.05 |
Energy contribution | -11.05 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.47 |
Structure conservation index | 0.64 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615476 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11974018 98 - 22407834 AAAAAA--ACAAAAGAAAA--AUCUUUUU----CCCGAAUGCAAUUUGCCAAAUGUCUUCACCAAUGAUUGCAACAAAAGCGGCAACGAAAGCCAGCCAAAAACAA ......--..((((((...--.)))))).----......(((((((.......((....)).....)))))))........(((..(....)...)))........ ( -12.90) >DroSec_CAF1 193503 100 - 1 AAAAAAAAAAAAAAGAAAA--AUCUUUUU----CCCGAAUGCAAUUUGCCAAAUGUCUUCACCAAUGAUUGCAACAAAAGCGGCAACGAAAGCCAGCCAAAAACAA .........(((((((...--.)))))))----......(((((((.......((....)).....)))))))........(((..(....)...)))........ ( -13.80) >DroSim_CAF1 159888 98 - 1 AAAAAA--ACAAAAGAAAA--AUCUUUUU----CCCGAAUGCAAUUUGCCAAAUGUCUUCACCAAUGAUUGCAACCAAAGCGGCAACGAAAGCCAGCCAAAAACAA ......--..((((((...--.)))))).----......(((((((.......((....)).....)))))))........(((..(....)...)))........ ( -12.90) >DroEre_CAF1 167912 101 - 1 CACGGU--ACACAAAAAAA---GCAUUUGGGAAACCAAAUGCAAUUUGCCAAAUGUCUUUGCCAAUGAUUGCAACACAAGCGGCAACGAAAGCCAGCCAAAAACAA ...(((--...........---((((((((....))))))))...(((((...(((..((((........)))).)))...)))))(....)...)))........ ( -28.70) >DroYak_CAF1 164761 100 - 1 CAAGGU--ACAAAAAAAAAAUAGCGUUUU----CCCGAAUGCAAUUUGCCAAAUGUCUUUGCCAAUGAUUGCAACAAAAGCGGCAACGAAAGCCAGCCAAAAACAA (((((.--(((......((((.((((((.----...)))))).))))......)))))))).........((.......))(((..(....)...)))........ ( -17.40) >consensus AAAAAA__ACAAAAGAAAA__AUCUUUUU____CCCGAAUGCAAUUUGCCAAAUGUCUUCACCAAUGAUUGCAACAAAAGCGGCAACGAAAGCCAGCCAAAAACAA .......................................(((((((....................)))))))........(((..(....)...)))........ (-11.05 = -11.05 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:43 2006