Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,970,391 – 11,970,500 |
Length | 109 |
Max. P | 0.847298 |
Location | 11,970,391 – 11,970,500 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 93.49 |
Mean single sequence MFE | -32.44 |
Consensus MFE | -27.78 |
Energy contribution | -27.78 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.86 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.847298 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11970391 109 + 22407834 CGAUCAUGGCUUGUGGGUCUCGACGAGGU--------GUAUACGGGCAUUUUGACUCGUAUACACGCGCUUCUAUUAGACCUUUUGACUGUUGGCCACGCUAAUUUCUGUCUAAUGU .........(((((.(....).)))))((--------((((((((((.....).))))))))))).......((((((((.....((..((((((...)))))).)).)))))))). ( -31.60) >DroSec_CAF1 189777 109 + 1 CGAUCAUGGCUUUUGGGUCUCGUCGAGGU--------GUAUACGGGCAUUUUGACUCGUAUACACGCGCUUCUAUUAGACCUUUUGACUGUUGGCCACGCUAAUUUCUGUCUAAUGU ((((...((((....))))..))))..((--------((((((((((.....).))))))))))).......((((((((.....((..((((((...)))))).)).)))))))). ( -32.60) >DroSim_CAF1 156140 109 + 1 CGAUCAUGGCUUUUGGGUCUCGACGAGGU--------GUAUACGGGCAUUUUGACUCGUAUACACGCGCUUCUAUUAGACCUUUUGACUGUUGGCCACGCUAAUUUCUGUCUAAUGU ((.((..((((....))))..))))..((--------((((((((((.....).))))))))))).......((((((((.....((..((((((...)))))).)).)))))))). ( -31.10) >DroEre_CAF1 164390 109 + 1 CGAUCAUGGCUUUUGGGUCUCGCCGAGGU--------GUAUACGGGCAUUUUGACUCGUAUACACGCGCUUCUAUUAGACCUUUUGACUGUUGGCCACGCUAAUUUCUGUCUUUAGU .......((((..((((...(((....((--------((((((((((.....).))))))))))))))..))))..)).))....(((.((((((...))))))....)))...... ( -30.40) >DroYak_CAF1 161052 114 + 1 CGAUCAUGGCUUUUGGGUCUCGCCGAGGUGUACGAGUGUAUACGGGCAUUUGGACUCGUAUACACGCGCUUCUAUUAGACCUUUUGACUGUUGGCCACGCUAAUUUCUGUCUAU--- ..............((((((....(((((((....(((((((((((........))))))))))))))))))....))))))...(((.((((((...))))))....)))...--- ( -36.50) >consensus CGAUCAUGGCUUUUGGGUCUCGACGAGGU________GUAUACGGGCAUUUUGACUCGUAUACACGCGCUUCUAUUAGACCUUUUGACUGUUGGCCACGCUAAUUUCUGUCUAAUGU ..............((((((....(((((........((((((((((.....).)))))))))....)))))....))))))...(((.((((((...))))))....)))...... (-27.78 = -27.78 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:35 2006