Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,968,796 – 11,968,896 |
Length | 100 |
Max. P | 0.686877 |
Location | 11,968,796 – 11,968,896 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 94.00 |
Mean single sequence MFE | -21.33 |
Consensus MFE | -18.37 |
Energy contribution | -18.70 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.12 |
Structure conservation index | 0.86 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686877 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11968796 100 - 22407834 AUAUGAUUAAAUUUAUUACACACUUCUUGGAAGUGUUCGCUAGUUCUUGGUUCUAGUUCCAGUGCGUUUUUUAGUAUCUGGUUUUUGAUUAUAUGGCGUU (((((((((((........(((((((...)))))))..(((((.........))))).(((((((........))).))))..)))))))))))...... ( -22.30) >DroSec_CAF1 188206 96 - 1 AUAUGAUUAAAUUUAUUACACACUUCUUGGAAGUGUUUGCUAGAUCUUGGUUCUAGUUCCAG----UUUUUUAGUAUCAGUUUUUUGAUUAUAUGGCUUU (((((((((((........(((((((...))))))).(((((((..((((........))))----...))))))).......)))))))))))...... ( -21.00) >DroSim_CAF1 154561 100 - 1 AUAUGAUUAAAUUUAUUACACACUUCUUGGAAGUGUUCGCUAGAUCUUGGUUCUAGUUCCAGUGCGUUUUUUAGUAUCAGGUUUUUGAUUAUAUGGCGUU (((((((((((........(((((((...)))))))..((((((.......)))))).((.((((........))))..))..)))))))))))...... ( -20.70) >consensus AUAUGAUUAAAUUUAUUACACACUUCUUGGAAGUGUUCGCUAGAUCUUGGUUCUAGUUCCAGUGCGUUUUUUAGUAUCAGGUUUUUGAUUAUAUGGCGUU (((((((((((.....((((((((((...)))))))..((((((.......))))))................))).......)))))))))))...... (-18.37 = -18.70 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:32 2006