Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,968,550 – 11,968,645 |
Length | 95 |
Max. P | 0.821083 |
Location | 11,968,550 – 11,968,645 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.65 |
Mean single sequence MFE | -27.66 |
Consensus MFE | -22.26 |
Energy contribution | -22.86 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.40 |
Structure conservation index | 0.80 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821083 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11968550 95 - 22407834 GCAUUCCAUU-------GAU----CCU------A--------CCUGUGAUCCUUUCACAGUCGCAUACAACUGGUUAAGUAUCCACUUGGCUGUUAGAGCACCGGAAGGUCGACCAGUUA ((..((....-------)).----...------.--------.((((((.....))))))..))....((((((((.............(((.....)))(((....))).)))))))). ( -25.50) >DroSec_CAF1 187960 95 - 1 GCAUUCCAUU-------GAU----CCC------A--------CCUGUGAUCCUUUCACACCGGCAUACAACUGGUUAAGUAUCCACUUGGCUGUUAGAGCACCGGAAGGUCGACCAGUUA .......(((-------(.(----(..------(--------(((((((.....)))).((((..(..(((.((((((((....)))))))))))..)...)))).)))).)).)))).. ( -23.10) >DroSim_CAF1 154315 95 - 1 GCAUUCCAUU-------GAU----CCC------A--------CCUGCGAUCCUUUCACACCGGCAUACAACUGGUUAAGUAUCCACUUGGCUGUUAGAGCACCGGAAGGUCGACCAGUUA ((........-------(((----(.(------.--------...).))))...........))....((((((((.............(((.....)))(((....))).)))))))). ( -20.91) >DroEre_CAF1 162626 120 - 1 GCUGUCCCAUAUGAAUUUACAACACUUGUACUGAUCUCCAUUCCUGUGAUCCUGUCACAGAGCCCUCCAACUGGUUGAGCCUCCACUUUGCUGUUAGAGCACCGGAAGGUCGACCAGUUA (((..............((((.....)))).............(((((((...)))))))))).....((((((((((.(((((....((((.....))))..)).))))))))))))). ( -33.40) >DroYak_CAF1 159144 105 - 1 GCUUUCCAAUAUCAUUUUAC----CCUGU---GAU--------CUGUGAUCCUUUCACAGAGACAGGUAACUGGUUAGGUAUCCACUUGGCUGUUAGAGCACCGGAAGGUCGACCAGUUA ....................----(((((---..(--------((((((.....))))))).)))))(((((((((.............(((.....)))(((....))).))))))))) ( -35.40) >consensus GCAUUCCAUU_______GAU____CCU______A________CCUGUGAUCCUUUCACAGAGGCAUACAACUGGUUAAGUAUCCACUUGGCUGUUAGAGCACCGGAAGGUCGACCAGUUA ...........................................((((((.....))))))........((((((((.............(((.....)))(((....))).)))))))). (-22.26 = -22.86 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:31 2006