Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,236,956 – 1,237,063 |
Length | 107 |
Max. P | 0.771280 |
Location | 1,236,956 – 1,237,063 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.90 |
Mean single sequence MFE | -25.50 |
Consensus MFE | -17.52 |
Energy contribution | -18.27 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.06 |
Structure conservation index | 0.69 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1236956 107 - 22407834 UUGCAUUUGUACUGAUUUUAUUUGGUUUUUAUUGAAUUGAUAAAAUCACAACGGCCAGGCGAGUCC----------UCGAGUCCUCGUCCUUGCGCUCCCCCAACCUUUU--CACC-CUC ..((...(((..((((((((.(..((((.....))))..)))))))))..)))((.(((((((..(----------....)..)))).))).))))..............--....-... ( -24.60) >DroSec_CAF1 14362 109 - 1 UUGCAUUUGUACUGAUUUUAUUUGGUUUUUAUUGAAUUGAUAAAAUCACAACGGCCAGGCGAGUCC----------UCGAGUCCUCGUCCUUGCGCUCUCCCCCUCCUUUUCCCCC-AUC ..((...(((..((((((((.(..((((.....))))..)))))))))..)))((.(((((((..(----------....)..)))).))).))))....................-... ( -24.60) >DroSim_CAF1 10484 109 - 1 UUGCAUUUGUACUGAUUUUAUUUGGUUUUUAUUGAAUUGAUAAAAUCACAACGGCCAGGCGAGUCC----------UCGAGUCCUCGUCCUUGCGCUCUCUCCCCCUUUUUCCCCC-AUC ..((...(((..((((((((.(..((((.....))))..)))))))))..)))((.(((((((..(----------....)..)))).))).))))....................-... ( -24.60) >DroYak_CAF1 10388 118 - 1 UUGCAUUUGUACUGAUUUUAUUUGGUUUUUAUUGAAUUGAUAAAAUCACAACGGCCAGGCGUAGCCAGCGAGCAGUUCGAGUCCUCGUCCUUGCUCUCG--UCCUGUUUUUCCCCCUCUC ..((....((..((((((((.(..((((.....))))..)))))))))..))(((........))).))((((((..((((..(........)..))))--..))))))........... ( -28.20) >consensus UUGCAUUUGUACUGAUUUUAUUUGGUUUUUAUUGAAUUGAUAAAAUCACAACGGCCAGGCGAGUCC__________UCGAGUCCUCGUCCUUGCGCUCUCCCCCCCUUUUUCCCCC_AUC ..((...(((..((((((((.(..((((.....))))..)))))))))..)))((.(((((((....................)))).))).))))........................ (-17.52 = -18.27 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:39 2006