Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,966,155 – 11,966,261 |
Length | 106 |
Max. P | 0.715215 |
Location | 11,966,155 – 11,966,261 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.85 |
Mean single sequence MFE | -17.83 |
Consensus MFE | -12.98 |
Energy contribution | -14.35 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.07 |
Mean z-score | -1.68 |
Structure conservation index | 0.73 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11966155 106 - 22407834 CGAUCUAGCAUGUUCAGCAGAUUAGUUUUAAUUAAUAUGUGCUACAAUAGUAUUAAUUAAAAUCCUUGCUUCCUUACAUUUAUUAUGCAAUAAAUGC----AUUGCUGCA---------- .....(((((.....(((((....((((((((((((((.((...))...))))))))))))))..)))))......((((((((....)))))))).----..)))))..---------- ( -20.80) >DroSec_CAF1 185551 103 - 1 CGAUCUAACACAC---GCAGAAUAGUUUUAAUUAAUAUGUGAAACAAUAGUAUUAAUUAAAAUCCUUGCUUCCUUCCAUUUAUUAUGCAAUAAAUGC----AUUGCUGCA---------- .............---((((....((((((((((((((.((...))...)))))))))))))).............((((((((....)))))))).----....)))).---------- ( -18.70) >DroSim_CAF1 151903 103 - 1 CGAUCUAACACAC---GCAGAAUAGUUUUAAUUAAUAUGUGCAACAACAGUAUUAAUUAAAAUCCUUGCUUCCUUCCAUUUAUUAAGCAAUAAAUGC----AUUGCUGCA---------- .............---((((....((((((((((((((((......))).))))))))))))).............((((((((....)))))))).----....)))).---------- ( -20.40) >DroYak_CAF1 156684 120 - 1 CUAUUUAACAUAUUCCACAGAACAGCUUUAGUUAACCAGUGCUACAAUAGAAUUAAUUAAAAUCCUUGCUUUCCUCCAUUUACUAUCCAAUAAAUUCAGGCUUUGCUGCAUAUUUGUUAG .....(((((.((....(((...(((((((((........)))).....(((((.(((..............................))).))))))))))...)))...)).))))). ( -11.41) >consensus CGAUCUAACACAC___GCAGAAUAGUUUUAAUUAAUAUGUGCAACAAUAGUAUUAAUUAAAAUCCUUGCUUCCUUCCAUUUAUUAUGCAAUAAAUGC____AUUGCUGCA__________ ................((((....((((((((((((((((......))).))))))))))))).............((((((((....)))))))).........))))........... (-12.98 = -14.35 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:26 2006