Locus 4166

Sequence ID 2L_DroMel_CAF1
Location 11,964,555 – 11,964,659
Length 104
Max. P 0.947768
window6581

overview

Window 1

Location 11,964,555 – 11,964,659
Length 104
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 76.02
Mean single sequence MFE -21.96
Consensus MFE -11.62
Energy contribution -12.10
Covariance contribution 0.48
Combinations/Pair 1.07
Mean z-score -2.16
Structure conservation index 0.53
SVM decision value 1.38
SVM RNA-class probability 0.947768
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11964555 104 - 22407834
UGCCAAAGAAAAUGGUUGCUAAUGGUAGGGAAGGAACUCCCUAUAAGGCAAGGGAUUGUAAGCCAUAUAAAUCGAAAAG--------AAAAAGUAUUCAAUGGAAAAUAUUG
..(((..(((.((((((.......(((((((......)))))))...((((....)))).)))))).....((.....)--------).......)))..)))......... ( -20.70)
>DroSec_CAF1 183968 91 - 1
UGCCAAAGAAACUGGUUGCUAAUGGUAGGGAAGGAAGGCCCUAUAAGGCAAGGGAUUGUAAGGCAUAUAAAUCGAA-AG--------AAAAAGUAUUCAA------------
((((...((..((..(((((....((((((........))))))..)))))))..))....))))......((...-.)--------)............------------ ( -21.00)
>DroSim_CAF1 150337 91 - 1
UGCCAAAGAAACUGGUUGCUAAUGGUAGGGAAGGAAGGCCCUAUAAGGCAAGGGAUUGUAAGGUACAUAAAUCGAA-AG--------AAAAAGUAUUCAA------------
((((...((..((..(((((....((((((........))))))..)))))))..))....))))......((...-.)--------)............------------ ( -18.90)
>DroEre_CAF1 158740 105 - 1
UGCCC-AGAAACUGGUUGCUAAUGGUAGGG-----AAGCCCUAUAAGGCGAGGGAUUGUAAGCAGCAUAAAUCGAG-AGUGUGUCGUGAAAAGGAUUACAUCGAAAAUAAUG
(((((-((...)))).((((....((((((-----...))))))...((((....)))).)))))))....((((.-.(((.(((.(....).)))))).))))........ ( -24.30)
>DroYak_CAF1 155086 98 - 1
UGCCA-GGAAACUGGUUGCUAAUGCUAGGGCAGGAAAACCCUAUAAGGCCAGGGCUCGUAAGCAACAUAAAUCGAG------------AAAAGGAUUAAAUGGA-AAUGAAG
.((((-(....)))))((((...(((..((((((.....))).....)))..))).....)))).(((.((((...------------.....))))..)))..-....... ( -24.90)
>consensus
UGCCAAAGAAACUGGUUGCUAAUGGUAGGGAAGGAAAGCCCUAUAAGGCAAGGGAUUGUAAGCAACAUAAAUCGAA_AG________AAAAAGUAUUCAAU_GA_AAU___G
.((((.......))))((((....((((((........))))))..)))).............................................................. (-11.62 = -12.10 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:21 2006