Locus 4163

Sequence ID 2L_DroMel_CAF1
Location 11,963,659 – 11,963,758
Length 99
Max. P 0.730442
window6571

overview

Window 1

Location 11,963,659 – 11,963,758
Length 99
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 89.62
Mean single sequence MFE -19.66
Consensus MFE -18.00
Energy contribution -18.04
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.33
Structure conservation index 0.92
SVM decision value 0.42
SVM RNA-class probability 0.730442
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11963659 99 - 22407834
AAAAUUGUGCGCAUUGUUCGGAUGACUAUACAAUGUGCCUCGGUUGCUCUCUCACUGUCAACUACUUGAAACCAGAAAGGCAAAAAG-UUGAAAAGAAAA
..(((((.(((((((((..((....))..)))))))))..)))))....(((.....((((((..(((...((.....)))))..))-))))..)))... ( -21.90)
>DroSec_CAF1 183090 85 - 1
AAAAUUGUGCGCAUUGUUCGGAUGACUAUACAAUGUGCCUCGGUUGCUCUCUCACUGUCAACUACUUGAAACCAGAAAAGCAAAA---------------
..(((((.(((((((((..((....))..)))))))))..)))))(((.(((.....((((....))))....)))..)))....--------------- ( -19.60)
>DroSim_CAF1 149477 90 - 1
AAAAUUGUGCGCAUUGUUCGGAUGACUAUACAAUGUGCCUCGGUUGCUCUCUCACUGUCAACUACUUGAAACCAGAAAGGCAAAAA----------AAAA
..(((((.(((((((((..((....))..)))))))))..)))))((.((.((....((((....)))).....)).)))).....----------.... ( -19.80)
>DroEre_CAF1 157958 93 - 1
AAAAUUGUGCGCAUUGUUCGGAUGACUAUACAAUGUGCCUCGGUUGCUCUCUCACUGUCAACUACUUGAAACCAGAAAGGCAAAAAAAAUA-------AA
..(((((.(((((((((..((....))..)))))))))..)))))((.((.((....((((....)))).....)).))))..........-------.. ( -19.80)
>DroYak_CAF1 154177 92 - 1
AAAAUUGUGCGCAUUGUUCGAAUGACUAUACAAUGUGCCUGGCUUGCUCUCUCACUGUCAACUACUUGAAACCAGAAAGGCAAAAAA-UCA-------CA
........(((((((((............))))))))).....((((.((.((....((((....)))).....)).))))))....-...-------.. ( -17.20)
>consensus
AAAAUUGUGCGCAUUGUUCGGAUGACUAUACAAUGUGCCUCGGUUGCUCUCUCACUGUCAACUACUUGAAACCAGAAAGGCAAAAA____________AA
........(((((((((..((....))..))))))))).....(((((.(((.....((((....))))....)))..)))))................. (-18.00 = -18.04 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:12 2006