Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,962,286 – 11,962,378 |
Length | 92 |
Max. P | 0.975880 |
Location | 11,962,286 – 11,962,378 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 97.17 |
Mean single sequence MFE | -20.64 |
Consensus MFE | -19.32 |
Energy contribution | -19.60 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.04 |
Mean z-score | -1.65 |
Structure conservation index | 0.94 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.975880 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11962286 92 + 22407834 AUUUCGCCACUCAAUCUUAUCAAACACCAAUGGCCGGCAACAAAUUUUCGUUGCAUUUUACCGCAGGUUCAGAUAAAUGUCAUUCGCAGGCA .....(((........(((((....(((..(((...(((((........)))))......)))..)))...))))).(((.....)))))). ( -18.50) >DroSec_CAF1 181756 92 + 1 AUUUCGCCACUCAAUCUUAUCAAACACCAAUGGCCUGCAACAAAUUUUCGUUGCAUUUUGCCGCAGGUUCAGAUAAAUGUCAUUCGCAGGCA .....(((........(((((....(((..((((.((((((........))))))....))))..)))...))))).(((.....)))))). ( -22.80) >DroSim_CAF1 148132 92 + 1 AUUUCGCCACUCAAUCUUAUCAAACACCAAUGGCCGGCAACAAAUUUUCGUUGCAUUUUGCCGCAGGUUCAGAUAAAUGUCAUUCGCAGGCA .....(((........(((((....(((..((((..(((((........))))).....))))..)))...))))).(((.....)))))). ( -22.10) >DroEre_CAF1 156610 92 + 1 AUUUCGCCACUCAAUCUUAUCAAACAGCAAUGGUCGGCAACAAAUUCUCGUUGCAUUUUGCCGCAGGUUCAGAUAAAUGUCAUUCGCAGGCA .....(((........(((((....(((..((((..(((((........))))).....))))...)))..))))).(((.....)))))). ( -17.70) >DroYak_CAF1 152719 92 + 1 AUUUCGCCACUCAAUCUUAUCAAACACCAAUGGCCGGCAACAAAUUCGCGUUGCAUUUUGCCGCAGGUUCAGAUAAAUGUCAUUCGCAGGCA .....(((........(((((....(((..((((..(((((........))))).....))))..)))...))))).(((.....)))))). ( -22.10) >consensus AUUUCGCCACUCAAUCUUAUCAAACACCAAUGGCCGGCAACAAAUUUUCGUUGCAUUUUGCCGCAGGUUCAGAUAAAUGUCAUUCGCAGGCA .....(((........(((((....(((..((((..(((((........))))).....))))..)))...))))).(((.....)))))). (-19.32 = -19.60 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:11 2006