Locus 416

Sequence ID 2L_DroMel_CAF1
Location 1,236,000 – 1,236,120
Length 120
Max. P 0.543403
window673

overview

Window 3

Location 1,236,000 – 1,236,120
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 98.75
Mean single sequence MFE -23.11
Consensus MFE -22.35
Energy contribution -22.35
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.97
SVM decision value 0.02
SVM RNA-class probability 0.543403
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1236000 120 + 22407834
GCGGAAAACAUUAAAAAUUAACUGGCGGAAUAAUCGAAACUGUUAAAACGUUAAUUUAACACUUAAACAAGCCAAACCGCAGGACAACUCGCAACAGUUAACUGCGACUGCUAACGGCAA
((((..................((((.((....)).....(((((((.......))))))).........))))...(((((...((((......))))..))))).))))......... ( -22.60)
>DroSec_CAF1 13330 120 + 1
GCGGAAAACAUUAAAAAUUAACUGGCGGAAUAAUCGAAAUUGUUAAAACGUUAAUUUAACACUUAAACAAGCCAAACCGCAGGACAACUCGCAACAGUUAACUGCGACUGCUAACGGCAA
((((..................((((.((....)).....(((((((.......))))))).........))))...(((((...((((......))))..))))).))))......... ( -22.70)
>DroSim_CAF1 9113 120 + 1
GCGGAAAACAUUAAAAAUUAACUGGCGGAAUAAUCGAAACUGUUAAAACGUUAAUUUAACACUUAAACAAGCCAAACCGCAGGACAACUCGCAACAGUUAACUGCGACUGCUAACGGCAA
((((..................((((.((....)).....(((((((.......))))))).........))))...(((((...((((......))))..))))).))))......... ( -22.60)
>DroYak_CAF1 9416 120 + 1
GCGGAAAGCAUUAAAAAUUAACUGGCGGAAUAAUCGAAACUGUUAAAACGUUAAUUUAACACUUAAACAAGCCAAACCGCAGCACAACUCGCAACAGUUAACUGCGACUGCUAACGGCAA
((.(..((((.......(((((((((((............(((((((.......)))))))(((....))).....)))).((.......))..))))))).......))))..).)).. ( -24.54)
>consensus
GCGGAAAACAUUAAAAAUUAACUGGCGGAAUAAUCGAAACUGUUAAAACGUUAAUUUAACACUUAAACAAGCCAAACCGCAGGACAACUCGCAACAGUUAACUGCGACUGCUAACGGCAA
((((..................((((.((....)).....(((((((.......))))))).........))))...(((((...((((......))))..))))).))))......... (-22.35 = -22.35 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:38 2006