Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,958,589 – 11,958,695 |
Length | 106 |
Max. P | 0.875710 |
Location | 11,958,589 – 11,958,695 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 97.09 |
Mean single sequence MFE | -32.00 |
Consensus MFE | -31.08 |
Energy contribution | -31.16 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.06 |
Mean z-score | -1.30 |
Structure conservation index | 0.97 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11958589 106 - 22407834 CCAUUCUCCGUUCGCCUCUUUGCAGACAAAUGCCAUGGACUCGCUUACAAUUUGGUC-UCGUCUUGUCAAUCAAUUGGGAUCGAGUCGGGGUCUAGAACUGGAAAUG .((((.((((((((((((...(((......)))....((((((....).....((((-(((..(((.....))).)))))))))))))))))...)))).))))))) ( -29.30) >DroSec_CAF1 177888 106 - 1 CCAUUCUCCGUUCGCCUCUUUGCAGACAAAUGCCAUGGACUCGGUUACAAUUUGGUC-UCGUCUUGUCAAUCAAUUGGGAUCGAGUCGGGGCCUAGAACUGGAAAUG .((((.((((((((((((...(((......)))....((((((((..(((((.(((.-...........))))))))..)))))))))))))...)))).))))))) ( -34.00) >DroSim_CAF1 144331 106 - 1 CCAUUCUCCGUUCGCCUCUUUGCAGACAAAUGCCAUGGACUCGGUUACAAUUUGGUC-UCGUCUUGUCAAUCAAUUGGGAUCGAGUCGGGGCCUAGAACUGGAAAUG .((((.((((((((((((...(((......)))....((((((((..(((((.(((.-...........))))))))..)))))))))))))...)))).))))))) ( -34.00) >DroEre_CAF1 152826 106 - 1 CCAUUCUCCGUUCGCCUCUUUGCAGACAAAUGCCAUGGACUCGGUUACAAUUUGGUC-UCGUCUUGUCAAUCAAUUGGGAUCGAGUCGGGGCCAAGAACUGGAAAUG .((((.((((((((((((...(((......)))....((((((((..(((((.(((.-...........))))))))..)))))))))))))...)))).))))))) ( -34.00) >DroYak_CAF1 148653 107 - 1 CCAUUCUCCGUUCGCCUCUUUGCAGACAAAUGCCAUGGACUCGGUUACAAUUUGGUCGUCGUCUUGUCAAUCAAUUGGCAUCGAGUUGGUGCCCAGAACUGGAAAUG .((((.(((((((........(((......)))(((.((((((((..(((((.(((.(.(.....).).))))))))..)))))))).)))....)))).))))))) ( -28.70) >consensus CCAUUCUCCGUUCGCCUCUUUGCAGACAAAUGCCAUGGACUCGGUUACAAUUUGGUC_UCGUCUUGUCAAUCAAUUGGGAUCGAGUCGGGGCCUAGAACUGGAAAUG .((((.((((((((((((...(((......)))....((((((((..(((((.(((...(.....)...))))))))..)))))))))))))...)))).))))))) (-31.08 = -31.16 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:03 2006