Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,957,254 – 11,957,367 |
Length | 113 |
Max. P | 0.952409 |
Location | 11,957,254 – 11,957,367 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 88.73 |
Mean single sequence MFE | -31.14 |
Consensus MFE | -23.24 |
Energy contribution | -23.64 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.58 |
Structure conservation index | 0.75 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952409 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11957254 113 - 22407834 UGUAUGGUCCAUUUAGUUGUCAAUUAUUUUUGAUAGCCUCAGCUGAGGCAGCUGAUAAGAACUGGUGACUAGCAAGCACAAGACUUGUUUAACAAUCCCAGGAAAUCCGUACA .((((((((...(((((((((((......))))).(((((....)))))))))))...)).((((.((..(((((((....).))))))......)))))).....)))))). ( -33.80) >DroSec_CAF1 176615 91 - 1 UGUAUGGUCCAUUUAGUUGUCAAUUAUUUUUGAUAGCCUCCGCUGAGGGAGCUGAUAAGAAC----------------------UUGUUUAACAAUCCCAGGAAAUCCGUACA .(((((((((.....((((((((......)))))))).........((((...(((((....----------------------)))))......)))).)))...)))))). ( -25.80) >DroSim_CAF1 143016 113 - 1 UGUAUGGUCCAUUUAGUUGUCAAUUAUUUUUGAUAGCCUCGGCUGAGGCAGCUGAUAAGAACUGGUGACUAGCAAGCACAAGACUUGUUUAACAAUCCCAGGAAAUCCGUACA .((((((((...(((((((((((......))))).(((((....)))))))))))...)).((((.((..(((((((....).))))))......)))))).....)))))). ( -33.10) >DroEre_CAF1 151505 109 - 1 UGUAUGGUCCAUUUAGUUGUCAAUUAUUUUUGAUAGCCCCAGCUGAGGCAGCUGAUAAGAACUUGCGACUAG----CACCAGACUUGUUUAACAAUCCCAGGAAAUCCGUACA .(((((((((.....((((((((......))))))))..((((((...))))))(((((....(((.....)----)).....)))))............)))...)))))). ( -29.20) >DroYak_CAF1 147373 109 - 1 UGUAUGGUCCAUUUAGUUGUCAAUUAUUUUUGAUAGCCUCGGCCGAGGCAGCUGAUAAGAACUUGUGACUAG----CACAAGACUUGUUUAACAAUCCCAGGAAAUCCGUACA .(((((((((..(((((((((((......))))).(((((....)))))))))))((((..((((((.....----)))))).)))).............)))...)))))). ( -33.80) >consensus UGUAUGGUCCAUUUAGUUGUCAAUUAUUUUUGAUAGCCUCAGCUGAGGCAGCUGAUAAGAACUGGUGACUAG____CACAAGACUUGUUUAACAAUCCCAGGAAAUCCGUACA .(((((((((..(((((((((((......))))).(((((....))))))))))).............................(((.....))).....)))...)))))). (-23.24 = -23.64 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:02 2006