Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,955,357 – 11,955,459 |
Length | 102 |
Max. P | 0.692736 |
Location | 11,955,357 – 11,955,459 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 94.15 |
Mean single sequence MFE | -34.16 |
Consensus MFE | -31.26 |
Energy contribution | -31.46 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.19 |
Structure conservation index | 0.92 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692736 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11955357 102 - 22407834 CCCAUAAAUAUGCAUGUCGUAAAGUCUCUGGAUGGCGUGCUGUCGCAGUUGGCUGAUGAAUGGAGUCUGCUGGCGCCACC----------GGGAACAGCAGAACUAUCAAAC .((((......(((((((((..((...))..)))))))))..((((((....))).)))))))(((((((((...((...----------.))..)))))).)))....... ( -33.90) >DroSec_CAF1 174700 102 - 1 CCCAUAAAUAUGCAUGUAGUAAAGUCUCUGGAUGGCGUGCUGUCGCAGUUGGCUGAUGAAUGGAGUCUGCUGGCGCCACC----------GGGAACAGCAGAACUAUCAAAC .((((......((((((......(((....))).))))))..((((((....))).)))))))(((((((((...((...----------.))..)))))).)))....... ( -30.00) >DroSim_CAF1 141130 102 - 1 CCCAUAAAUAUGCAUGUCGUAAAGUCUCUGGAUGGCGUGCUGUCGCAGUUGGCUGAUGAAUGGAGUCUGCUGGCGCCACC----------GGGAACAGCAGAACUAUCAAAC .((((......(((((((((..((...))..)))))))))..((((((....))).)))))))(((((((((...((...----------.))..)))))).)))....... ( -33.90) >DroEre_CAF1 149564 112 - 1 CCCAUAAAUAUGCAUGUCGUAAAGUCACUCGAUGGCGUGCUGUCGCAGUUGGCUGAUGAAUGGAGUCUGCUGGCGCCACCGGGAGCCACCGGGAGCAGCAGAACUAUCAAAC .((((......(((((((((..((...))..)))))))))..((((((....))).)))))))(((((((((.(....((((......))))..))))))).)))....... ( -39.10) >DroYak_CAF1 145252 102 - 1 CCCAUAAAUAUGCAUGUCGUAUAGUCACUGGAUGGCGUGCUGUCGCAGUUGGCUGAUGAAUGGAGUCUGCUGGCGCCACC----------GGGAACAGCAGAACUAUCAAAC .((((......(((((((((.(((...))).)))))))))..((((((....))).)))))))(((((((((...((...----------.))..)))))).)))....... ( -33.90) >consensus CCCAUAAAUAUGCAUGUCGUAAAGUCUCUGGAUGGCGUGCUGUCGCAGUUGGCUGAUGAAUGGAGUCUGCUGGCGCCACC__________GGGAACAGCAGAACUAUCAAAC .((((......(((((((((..((...))..)))))))))..((((((....))).)))))))(((((((((...((..............))..)))))).)))....... (-31.26 = -31.46 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:50 2006