Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,951,777 – 11,951,878 |
Length | 101 |
Max. P | 0.553385 |
Location | 11,951,777 – 11,951,878 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 89.26 |
Mean single sequence MFE | -21.06 |
Consensus MFE | -16.28 |
Energy contribution | -16.76 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.08 |
Mean z-score | -1.48 |
Structure conservation index | 0.77 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11951777 101 - 22407834 CUGCAACAAAGUUGCAUAUUUUUCGUAUUAUAAAUAAUGAUAUUGUUAAUGCAAUCUGCAUUCCAUUGGUUCAUUAUAUUAGUUACGGAAGUGCAUACAUA .((((((...))))))...((((((((...((((((((((.......(((((.....)))))........))))))).)))..)))))))).......... ( -21.56) >DroSec_CAF1 171140 101 - 1 CUGCAACAAAGUUGCUUAUUUUUCGUGUUAUAAAUAAUGAUAUUGUUAAUGCGAUCUGCAUUCCAUUCGUUCAUUAUAUUAGUUACGGAAGUGCAUACAUA ..(((((...)))))....((((((((...((((((((((.......(((((.....)))))........))))))).)))..)))))))).......... ( -19.46) >DroSim_CAF1 137570 101 - 1 CUGCAACAAAGUUGCAUAUUUUUCGUGUUAUAAAUAAUGAUAUUGUUAAUGCGAUCUGCAUUCCAUUCGUUCAUUAUAUUAGUUACGGAAGUGCAUACAUA .((((((...))))))...((((((((...((((((((((.......(((((.....)))))........))))))).)))..)))))))).......... ( -20.56) >DroEre_CAF1 145960 96 - 1 CUCCAACAAAGUUGCAUAUUUUUCGUGUUAUAUAUAAUCAUAUUGCUAAUGCGAUCUGCAUUCCAUCGGCGCAUUGUUUUAGUUACGGAAGUGCAU----- ............(((((...(((((((..((((......)))).(((((.(((((.(((.........))).))))).))))))))))))))))).----- ( -17.60) >DroYak_CAF1 141486 97 - 1 CUGCAACAAAGUUGCAUAUGUUUCGUGUUAUGUAUAAUGAUAUUGUUAAUGCGAUCGGCAUUCCAAUGGCACAUUAUAUUAGUUACGGAAGUGCAUG---- .((((((...))))))(((((((((((....((((((((.(((((..(((((.....))))).)))))...))))))))....))))))...)))))---- ( -26.10) >consensus CUGCAACAAAGUUGCAUAUUUUUCGUGUUAUAAAUAAUGAUAUUGUUAAUGCGAUCUGCAUUCCAUUGGUUCAUUAUAUUAGUUACGGAAGUGCAUACAUA ............(((((...(((((((......(((((((.......(((((.....)))))........)))))))......))))))))))))...... (-16.28 = -16.76 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:48 2006