Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,951,604 – 11,951,694 |
Length | 90 |
Max. P | 0.564048 |
Location | 11,951,604 – 11,951,694 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 93.40 |
Mean single sequence MFE | -20.36 |
Consensus MFE | -17.44 |
Energy contribution | -17.28 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.21 |
Structure conservation index | 0.86 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11951604 90 + 22407834 UCUUAUGGUUCCCACCAAGUUUUCUUGACCAUUUUCUGCAGCUGUGUUUGCGGGAAAAUAAAGGAGAAGAAAAUUGCCGAAACUAAAACC .....((((....))))(((((((((..((.((((((((((......)))))))))).....))..)))))))))............... ( -19.40) >DroSec_CAF1 170969 89 + 1 -CUUAUGGUUCCCACCAAGUUUUCUUGACCAUUUUCUGCAGCUGUGUCUGCGGGAAAAUAAAGGAGAAGAAAAUUGCCGAAACUAAAACC -....((((....))))(((((((((..((.((((((((((......)))))))))).....))..)))))))))............... ( -21.20) >DroSim_CAF1 137396 88 + 1 -CAUAUGGUUCCCACCAAGUUUUCUUGACCAUUUUCUGCAGCUGUGUCUGCGGGAAAAUAAAGGAGAAGA-AAUUGCCGAAACUAAAACC -....((((....))))((((((........((((((((((......)))))))))).....((..((..-..)).))))))))...... ( -19.30) >DroEre_CAF1 145793 86 + 1 -CUUGAUGUUCCCACCAAGUU-UCUUGACCAUUUUCUGCAGCUGUGUCUGCGGGAAA--AAAGGAGAAGAAAAUUGCCGAAUCUAAAACC -......((((....(((.((-((((..((.((((((((((......))))))))))--...))..)))))).)))..))))........ ( -19.20) >DroYak_CAF1 141315 89 + 1 -CUUGCUCUUCCCACCAAGUUUUCUUGACCAUUUUCUGCAGCUGUGACUGCGGGAAAAUAAAGGAGAAGAAAAUUGCCGAAACUAAAACC -.....(((((((..((((....))))....((((((((((......)))))))))).....)).))))).................... ( -22.70) >consensus _CUUAUGGUUCCCACCAAGUUUUCUUGACCAUUUUCUGCAGCUGUGUCUGCGGGAAAAUAAAGGAGAAGAAAAUUGCCGAAACUAAAACC ........(((((..((((....))))....((((((((((......)))))))))).....)).)))...................... (-17.44 = -17.28 + -0.16)
Location | 11,951,604 – 11,951,694 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 93.40 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -18.20 |
Energy contribution | -19.60 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.42 |
Structure conservation index | 0.81 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564048 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11951604 90 - 22407834 GGUUUUAGUUUCGGCAAUUUUCUUCUCCUUUAUUUUCCCGCAAACACAGCUGCAGAAAAUGGUCAAGAAAACUUGGUGGGAACCAUAAGA (((((.....(((.((((((((((..((...((((((..(((........))).))))))))..))))))).))).))))))))...... ( -20.10) >DroSec_CAF1 170969 89 - 1 GGUUUUAGUUUCGGCAAUUUUCUUCUCCUUUAUUUUCCCGCAGACACAGCUGCAGAAAAUGGUCAAGAAAACUUGGUGGGAACCAUAAG- (((((.....(((.((((((((((..((...((((((..((((......)))).))))))))..))))))).))).)))))))).....- ( -23.20) >DroSim_CAF1 137396 88 - 1 GGUUUUAGUUUCGGCAAUU-UCUUCUCCUUUAUUUUCCCGCAGACACAGCUGCAGAAAAUGGUCAAGAAAACUUGGUGGGAACCAUAUG- (((((.....(((.(((((-((((..((...((((((..((((......)))).))))))))..))))))..))).)))))))).....- ( -21.20) >DroEre_CAF1 145793 86 - 1 GGUUUUAGAUUCGGCAAUUUUCUUCUCCUUU--UUUCCCGCAGACACAGCUGCAGAAAAUGGUCAAGA-AACUUGGUGGGAACAUCAAG- ..................((((((..((..(--((((..((((......)))).))))).))..))))-))(((((((....)))))))- ( -23.40) >DroYak_CAF1 141315 89 - 1 GGUUUUAGUUUCGGCAAUUUUCUUCUCCUUUAUUUUCCCGCAGUCACAGCUGCAGAAAAUGGUCAAGAAAACUUGGUGGGAAGAGCAAG- .((((...(..((.((((((((((..((...((((((..(((((....))))).))))))))..))))))).))).))..).))))...- ( -25.10) >consensus GGUUUUAGUUUCGGCAAUUUUCUUCUCCUUUAUUUUCCCGCAGACACAGCUGCAGAAAAUGGUCAAGAAAACUUGGUGGGAACCAUAAG_ .......(((((.((..(((((((..((...((((((..((((......)))).))))))))..)))))))....)).)))))....... (-18.20 = -19.60 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:47 2006