Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,951,393 – 11,951,544 |
Length | 151 |
Max. P | 0.994551 |
Location | 11,951,393 – 11,951,504 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.43 |
Mean single sequence MFE | -29.38 |
Consensus MFE | -19.20 |
Energy contribution | -20.24 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.23 |
Mean z-score | -2.32 |
Structure conservation index | 0.65 |
SVM decision value | 2.49 |
SVM RNA-class probability | 0.994551 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11951393 111 - 22407834 CUGCUGUUGUGGCAGUUGGAGUUUUUUGAAAUCUGAGAUGGGAAGAUAG-UUCUUCUUAUCUAGGUACUUACUUUUUGGUAGUACAGCUGCAAA--------UUUUAUAUCAUACACAUC (((((.....)))))(((.((((.........((.(((((((((((...-.)))))))))))))(((((.(((....)))))))))))).))).--------.................. ( -30.40) >DroSec_CAF1 170760 109 - 1 CUGCUGUUGUGGCAGUUGCAGCUUUUUGAAAUCUGAGAUGGGAAGAUAG-UUCUUCUAAUCUAGGUACAUACUUUUUGGUAGUACAGCUGCACU--------UUU--CAUUAUACACAUC (((((.....))))).(((((((.........((.((((.((((((...-.)))))).))))))((((.((((....)))))))))))))))..--------...--............. ( -32.90) >DroSim_CAF1 137187 109 - 1 CUGCUGUUGUGGCAGUUGCAGCUUUUUGAAAUCUGAGAUGGGAAGAUAG-UUCUUCUUAUCUAGGUACUUACUUUUUGGUAGUACAGCUGCACU--------UUU--UAUUACACACAUC (((((.....))))).(((((((.........((.(((((((((((...-.)))))))))))))(((((.(((....)))))))))))))))..--------...--............. ( -36.10) >DroEre_CAF1 145593 101 - 1 CUGCUGUUGCGCCAGUUGCUGUUUUCCGAAAACAGAGAUGCCAAGAUA--CUUUUCUUAUCUAGGUACUUACUU-UAAGUAGUACAAAUACACGGGA----------------AGAUAAC ..((((......))))...((((((((.......(((.((((.(((((--.......))))).)))))))....-...(((.......)))...)))----------------))))).. ( -20.30) >DroYak_CAF1 141100 113 - 1 CUGCUGUUGCAGCAGUUGCUGUUUUCCGAAAACAGAGAUGGCAAGAUAGAUUCUUCUUAUCUAGGUAC----UU-UGAAUAGUACUGAAAUACAGGAGCUUAGAA--UAUUGUAAGUAAC ((((((...))))))...((((((((.........((((((.((((.....)))).)))))).(((((----(.-.....)))))))))).))))..(((((.(.--...).)))))... ( -27.20) >consensus CUGCUGUUGUGGCAGUUGCAGUUUUUUGAAAUCUGAGAUGGGAAGAUAG_UUCUUCUUAUCUAGGUACUUACUUUUUGGUAGUACAGCUGCACA________UUU__UAUUAUACACAUC (((((.....))))).((.((((............(((((((((((.....)))))))))))..((((.((((....)))))))))))).))............................ (-19.20 = -20.24 + 1.04)
Location | 11,951,425 – 11,951,544 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.77 |
Mean single sequence MFE | -34.34 |
Consensus MFE | -26.92 |
Energy contribution | -27.80 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.12 |
Mean z-score | -1.52 |
Structure conservation index | 0.78 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611136 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11951425 119 - 22407834 ACGACAGGCGAAAUCGAAAUUGCAGUGCCAAAGUUGCCGCCUGCUGUUGUGGCAGUUGGAGUUUUUUGAAAUCUGAGAUGGGAAGAUAG-UUCUUCUUAUCUAGGUACUUACUUUUUGGU ............(((((((....((((((((((...(((.(((((.....))))).)))...)))).........(((((((((((...-.))))))))))).))))))....))))))) ( -35.50) >DroSec_CAF1 170790 119 - 1 ACGACAGGCGAAAUCGAAAUUGCAGUGUCAAAGUUGCCGCCUGCUGUUGUGGCAGUUGCAGCUUUUUGAAAUCUGAGAUGGGAAGAUAG-UUCUUCUAAUCUAGGUACAUACUUUUUGGU ..((((.((((........))))..))))((((((((...(((((.....)))))..)))))))).....((((.((((.((((((...-.)))))).)))))))).............. ( -35.10) >DroSim_CAF1 137217 119 - 1 ACGACAGGCGAAAUCGAAAUUGCAGUGCCAAAGUUGCCGCCUGCUGUUGUGGCAGUUGCAGCUUUUUGAAAUCUGAGAUGGGAAGAUAG-UUCUUCUUAUCUAGGUACUUACUUUUUGGU ............(((((((....((((((((((((((...(((((.....)))))..))))))))..........(((((((((((...-.))))))))))).))))))....))))))) ( -40.60) >DroEre_CAF1 145617 117 - 1 ACGACAGGCGAAAUCGAAAUUGCAGUGCCAAAGUUGCCGCCUGCUGUUGCGCCAGUUGCUGUUUUCCGAAAACAGAGAUGCCAAGAUA--CUUUUCUUAUCUAGGUACUUACUU-UAAGU .((((.((((.......(((.((((.((..........)))))).))).)))).))))((((((.....))))))((.((((.(((((--.......))))).)))))).....-..... ( -27.70) >DroYak_CAF1 141138 115 - 1 AGGACAGGCGAAAUCGAAAUUGCAGUGCCAAAGUUGCCGCCUGCUGUUGCAGCAGUUGCUGUUUUCCGAAAACAGAGAUGGCAAGAUAGAUUCUUCUUAUCUAGGUAC----UU-UGAAU ....(((((((........))))((((((.....(((((.((.((((((((((....)))))........))))))).)))))(((((((....)).))))).)))))----))-))... ( -32.80) >consensus ACGACAGGCGAAAUCGAAAUUGCAGUGCCAAAGUUGCCGCCUGCUGUUGUGGCAGUUGCAGUUUUUUGAAAUCUGAGAUGGGAAGAUAG_UUCUUCUUAUCUAGGUACUUACUUUUUGGU .......((((........)))).(((((((((((((...(((((.....)))))..))))))))..........(((((((((((.....))))))))))).)))))............ (-26.92 = -27.80 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:44 2006