Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,950,208 – 11,950,299 |
Length | 91 |
Max. P | 0.534582 |
Location | 11,950,208 – 11,950,299 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 76.20 |
Mean single sequence MFE | -26.63 |
Consensus MFE | -15.55 |
Energy contribution | -15.63 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.33 |
Mean z-score | -1.43 |
Structure conservation index | 0.58 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534582 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11950208 91 + 22407834 AUCUA---------UGCCUGGCAUACAAAAUGCAUCUAAUUUUGGGCCUAACGACAACU-UGUCGCUUGUCAUGGCCU--CCUGGCCCGAGUCGCGUUGCUGC-- ...((---------(((...)))))......(((......((((((((....(((....-.)))(((......)))..--...))))))))......)))...-- ( -24.30) >DroVir_CAF1 154579 99 + 1 CUGUCUCUUUCGCAUG-CCGGCAUGU-AAAUGCCUCUAAUUUUGGACCUAACGACAACUUUGUCGUUUGUCAUGGCACAUGGAUGUCUU--UGGCAUUGUUGU-- ...............(-(((((((..-..)))))..........(((..(((((((....))))))).)))..)))(((..(((((...--..)))))..)))-- ( -29.00) >DroSec_CAF1 169472 91 + 1 AUCCA---------UGCCUGGCAUACAAAAUGCAUCUAAUUUUGGGCCUAACGACAACU-UGUCGCUUGUCAUGGCCU--CCUGGCCCGAGUCGCGUUGCUGC-- ....(---------(((...((((.....)))).......((((((((....(((....-.)))(((......)))..--...))))))))..))))......-- ( -24.10) >DroEre_CAF1 144153 93 + 1 AUCUA---------UGCCUGGCAUACAAAAUGCAUCUAAUUUUGGGCCUAACGACAACU-UGUCGCUUGUCAUGGCCU--CCUGGCCCGAGUCGCGUUGUUGUAG .....---------.....(((...((((((.......)))))).)))..((((((((.-.((.(((((....((((.--...))))))))).)))))))))).. ( -29.70) >DroYak_CAF1 139762 91 + 1 AUCUA---------UGCCUGGCAUACAAAAUGCAUCUAAUUUUGGGCCUAACGACAACU-UGUCGCUUGUCAUGGCCU--CCUGGCCCGAGUCGCGUUGUUGU-- .....---------.....(((...((((((.......)))))).)))..((((((((.-.((.(((((....((((.--...))))))))).))))))))))-- ( -29.00) >DroMoj_CAF1 162717 97 + 1 CUUUGUCUCUCGCUAG-CCGGCAUGU-AAAUGCCUCUAAUUUUGGGAAGAACGACAACU-UGUCUUUUGUCAUGGCCCAUGGAUGUCU---UGGCUUUGUAAU-- ...........((.((-(((((((..-..)))))((((....((((......(((((..-......)))))....)))))))).....---.))))..))...-- ( -23.70) >consensus AUCUA_________UGCCUGGCAUACAAAAUGCAUCUAAUUUUGGGCCUAACGACAACU_UGUCGCUUGUCAUGGCCU__CCUGGCCCGAGUCGCGUUGUUGU__ ..............(((...((((.....))))........(((((((....((((....))))(((......))).......)))))))...)))......... (-15.55 = -15.63 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:42 2006