Locus 4147

Sequence ID 2L_DroMel_CAF1
Location 11,947,909 – 11,948,003
Length 94
Max. P 0.523161
window6539

overview

Window 9

Location 11,947,909 – 11,948,003
Length 94
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 89.83
Mean single sequence MFE -27.84
Consensus MFE -19.52
Energy contribution -21.80
Covariance contribution 2.28
Combinations/Pair 1.07
Mean z-score -1.89
Structure conservation index 0.70
SVM decision value -0.02
SVM RNA-class probability 0.523161
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11947909 94 - 22407834
UGAGCUCGAAUUCGGUUUUUGU--GUGCUGCUUUGUUUGUGUGCCACGGACUUGACAUUCGCAGCGCAGGCAAACUGUUUCCCAGUUCUUCAGCAC
.(((((.(((..((((((.(.(--(((((((...(((((((...)))))))..(.....))))))))).).)))))).)))..)))))........ ( -30.30)
>DroSec_CAF1 167167 94 - 1
UGAGCUCGAAAUCGGUUUUUGU--GUGCUACUUUGUUUGUGUGCCACGGACUUGACAUUCGCAGCGCAGGCAAACUGUUUUCCAGUUCUUCAGCAC
.(((((.((((.((((((.(.(--(((((.....(((((((...)))))))..(.....)..)))))).).)))))).)))).)))))........ ( -27.90)
>DroSim_CAF1 133644 94 - 1
UGAGCUCGAAAUCGGUUUUUUU--GUGCUACUUUAUUUGUGUGCCACAGACUUGACAUUCGCAGCGCAGGCAAACUGUUUUCCAGUUCUUUAGCAC
.(((((.((((.((((((.(((--(((((......((((((...))))))...(.....)..)))))))).)))))).)))).)))))........ ( -26.30)
>DroEre_CAF1 141563 90 - 1
----CUCGAAAUCGGUUUUUGU--GUGCUGCUUUGUUUGUGGCCCACGGACUUGACAUUCGCAGCACAGGCAAACAGUUUUCCAGUUCUUCCUCAC
----((.((((...((((.(.(--(((((((...(((((((...)))))))..(.....))))))))).).))))...)))).))........... ( -25.30)
>DroYak_CAF1 137339 92 - 1
----CCCGAAAUCGGUUUUUGUGUGUGCUGCUUUGUUUGUGGCCCACGGACUUGACAUUCGCAGCGCAGGCAAACUGUUUUCCAGUUCUUCAUCAC
----...((((.(((((..(((.((((((((...(((((((...)))))))..(.....))))))))).)))))))).)))).............. ( -29.40)
>consensus
UGAGCUCGAAAUCGGUUUUUGU__GUGCUGCUUUGUUUGUGUGCCACGGACUUGACAUUCGCAGCGCAGGCAAACUGUUUUCCAGUUCUUCAGCAC
.(((((.((((.((((((......(((((((...(((((((...)))))))..(.....))))))))....)))))).)))).)))))........ (-19.52 = -21.80 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:41 2006