Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,945,931 – 11,946,023 |
Length | 92 |
Max. P | 0.507274 |
Location | 11,945,931 – 11,946,023 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 77.40 |
Mean single sequence MFE | -38.77 |
Consensus MFE | -24.75 |
Energy contribution | -25.58 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.19 |
Mean z-score | -1.21 |
Structure conservation index | 0.64 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11945931 92 - 22407834 GACGGGCAGGCGGGUGGCGAGCAAAGUGGGUGGAUGGGAGACCACGGUGGCCUGAAUG------------------------CUGGGCAGGCUUUGGGCCAGGAGUAGGGUCUGCU ....(((((((...((.(.((((...(((((.(.(((....)))...).)))))..))------------------------)).).))(((.....))).........))))))) ( -36.40) >DroPse_CAF1 141043 113 - 1 GGAUGGCAGGCGGGA---GAGCAGUGUGGGUGGAUGCGAUACGACGGUGGCCUGGACGCUCUGGCCGAGCAGUUGGCUGGCGCUGGGCAGGCUCUGGGCCAGGAGCAGGGUCUGUU ....(((((((....---.....((.(((((.(.((((...)).)).).))))).))(((((((((.((.(((..(((.......)))..))))).))))).))))...))))))) ( -43.00) >DroSim_CAF1 131680 92 - 1 GCCGGGCAGGCGGGAGGCGAGCAAAGUGGGUGGAUGGGAGACCACGGUGGCCUGAAUG------------------------CUGGGCAGGCUUUGGGCUAGGAGUAGGGUCUGCU (((.....)))......(.((((...(((((.(.(((....)))...).)))))..))------------------------)).)((((((((((..(...)..)))))))))). ( -34.00) >DroEre_CAF1 139692 92 - 1 GGCGGGCAGACGGGAGGCGAGCAAAGUGGGCGGAUGGGAGACCACGGUGGCCUGAAUG------------------------CUGGGCAGGCUUUGGGUCAGCAGCAGGGUCUGCU ..(.((((..((((..((..((.......))...(((....)))..))..))))..))------------------------)).)((((((((((.(....)..)))))))))). ( -35.70) >DroYak_CAF1 135389 92 - 1 GGCGGGCAGACGGGAGGCGAGCAGAGUGGGCGGAUGGGAGACCACGGUGGCCUGAAUG------------------------CUGGGCAGGCUUUGGGCCAGGAGCAGGGUCUGCU ....(((((((....(.(.((((...(((((.(.(((....)))...).)))))..))------------------------)).).).(((.....))).........))))))) ( -38.90) >DroPer_CAF1 147326 113 - 1 GGAUGGCAGGCGGGA---GAGCAGUGUGGGUGGAUGCGAUACGACGGUGGCUUGGACGCUCUGGCCGAGCAGUUGGCUGGCGCUGGGCAGGCUCUGGGCCAGGAGCAGGGUCUGCU ....((((((((...---(((((.(((.(.((....))...).))).).))))...)(((((((((.((.(((..(((.......)))..))))).))))).))))...))))))) ( -44.60) >consensus GGCGGGCAGGCGGGAGGCGAGCAAAGUGGGUGGAUGGGAGACCACGGUGGCCUGAAUG________________________CUGGGCAGGCUUUGGGCCAGGAGCAGGGUCUGCU ....(((((((..............((((............))))(((((((((..(((.((((((((....)))))))).)).)..))))))....))).........))))))) (-24.75 = -25.58 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:40 2006