Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,944,074 – 11,944,165 |
Length | 91 |
Max. P | 0.516897 |
Location | 11,944,074 – 11,944,165 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 81.72 |
Mean single sequence MFE | -35.57 |
Consensus MFE | -19.73 |
Energy contribution | -20.90 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.27 |
Mean z-score | -2.09 |
Structure conservation index | 0.55 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516897 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11944074 91 + 22407834 GUCUGGUUCUGGCGAUGGCCCUUUUAUGCC--------------CUGU-CGUUAUAAAAUGGCCAGUGGGCGUUGGUGGUGGCAUCAGUUCGCCAUCGG-CAGCAAA ........(((.(((((((......(((((--------------(.((-((((....))))))....))))))(((((....)))))....))))))).-))).... ( -34.00) >DroGri_CAF1 146040 107 + 1 GGCUGGUUCUUGCGAUGGCCCUUUUGGGCCAAGUACCAACUGUCCAGCUAUGUAUAAAAUAGUCGAUGGCUGUUGGGGUAAGCAUCAGUAGCACAACGUGCCACAAU .((((((.(((((..((((((....))))))....(((((.(.((((((((.......)))))...)))).))))).))))).)))))).((((...))))...... ( -41.30) >DroSec_CAF1 163358 91 + 1 GUCUGGUUCUGGCGAUGGCCCUUUUAUGCC--------------CUGU-CGUUAUAAAAUGGCCAGUGGGCGUUGGUGUUGGCAUCAGUUCGCCAUCGG-CAGCAAA ........(((.(((((((......(((((--------------(.((-((((....))))))....))))))(((((....)))))....))))))).-))).... ( -34.80) >DroSim_CAF1 129841 91 + 1 GUCUGGUUCUGGCGAUGGCCCUUUUAUGCC--------------CUGU-CGUUAUAAAAUGGCCAGUGGGCGUUGGUGGUGGCAUCAGUUCGCCAUCGG-CAGCAAA ........(((.(((((((......(((((--------------(.((-((((....))))))....))))))(((((....)))))....))))))).-))).... ( -34.00) >DroEre_CAF1 137927 89 + 1 GUCUGGUUCUGGCGAUGGCCCUUUU--GCC--------------CUGC-CAUUAUAAAAUGGCCAGUGGGCGUUGGAGGUGGCAUCAGUUCGCCAACGG-CAGCAAG (.(((.(..((((((..((((((((--(((--------------(.((-((((....))))))....)))))...)))).)))......))))))..).-))))... ( -34.80) >DroYak_CAF1 133589 90 + 1 GUCAGGUUCUGGCGAUGGCCCUUUU-UCCC--------------CUGC-CAUUAUAAAAUGGCCAGUGGGCGUUGGUGGUGGCAUCAGUUCGCCAUCGG-CAGCAAA ........(((.(((((((......-.(((--------------((((-((((....))))).))).)))..((((((....))))))...))))))).-))).... ( -34.50) >consensus GUCUGGUUCUGGCGAUGGCCCUUUUAUGCC______________CUGC_CGUUAUAAAAUGGCCAGUGGGCGUUGGUGGUGGCAUCAGUUCGCCAUCGG_CAGCAAA ((((....(((((...(((........)))...................((((....))))))))).))))((((..((((((........))))))...))))... (-19.73 = -20.90 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:39 2006