Locus 4144

Sequence ID 2L_DroMel_CAF1
Location 11,936,595 – 11,936,714
Length 119
Max. P 0.545683
window6536

overview

Window 6

Location 11,936,595 – 11,936,714
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 83.31
Mean single sequence MFE -36.14
Consensus MFE -24.21
Energy contribution -23.47
Covariance contribution -0.74
Combinations/Pair 1.23
Mean z-score -1.89
Structure conservation index 0.67
SVM decision value 0.02
SVM RNA-class probability 0.545683
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11936595 119 - 22407834
AAUUUGGUAUGUUACACUUAGCCAAAAUAUUAGUUCCGUGGCCUGCACAUCGUAUGGAAACCAGGCGGGAUAUAAUAGCUUAUGUCCACCGCCGAAAAGAACUGAUGCAAUAGCCGAGA
..((((((..((((....)))).....(((((((((.((..(((((.....))).))..))..((((((((((((....)))))))..))))).....))))))))).....)))))). ( -33.00)
>DroPse_CAF1 131791 119 - 1
AAUUUGGUAGGACACACUGAGCCAGUAGAUCUGUUCGGAUGCCUGAACAUCAUAGGGAAACCAGGCAGGAUACAGCAGCUUGUGUCCUUUGCCGAAAAGAACAGUGGCUAUGGCCGCCG
..(((((((((((((((((.(((....((..(((((((....)))))))))...((....)).))).(....)..)))..))))))))..)))))).......(((((....))))).. ( -45.10)
>DroSim_CAF1 122464 119 - 1
AAUUUGAUACGUUACACUAAGCCAAAAUAUUAGUUCCGAGGCCUGCACAUCGUAUGGAAACCAGGCGGGAUAUAAUAGCUUAUGUCCACCCGCGAAGAGAACUGAUGCUAUAGCCGAGA
................((..((.....((((((((((...(((((....((.....))...))))).((((((((....)))))))).........).))))))))).....))..)). ( -27.20)
>DroEre_CAF1 127770 119 - 1
AAUUUGGUAGGUUACACUUAGCCAAUAUAUUAGUUCCGAGGCCUGCACAUCGUAUGGGAACCAGGCUGGAUAUAAUAGCUUAUGUCCACCGCCGAAAAGUACUGAUGCUAUAGCCGAAA
..((((((.(((((....))))).((((((((((.....(((............(((...)))((.(((((((((....)))))))))))))).......))))))).))).)))))). ( -32.00)
>DroYak_CAF1 125794 119 - 1
AAUUUGGUAGGUUACACUUAGCCAAAAUAUUAGUUCCGAGGCCUGCACAUCGUAUGGGAACCAGGCUGGAUAUAAUAGCUUAUGUCCACCGCCGAAAAGUACUGAUGCUAUGGCCGAUA
..(((((((((.....))).)))))).............((((....((((((((........((((((((((((....)))))))))..))).....)))).))))....)))).... ( -34.72)
>DroPer_CAF1 138069 119 - 1
AAUUUGGUAGGACACACUGAGCCAGUAGAUCUGUUCGGAUGCCUGAACAUUAUAGGGAAACCAGGCAGGAUACAGCAGCUUGUGUCCUUUGCCGAAAAGAACAGUGGCUAUGGCCGCCG
..(((((((((((((((((.(((........(((((((....))))))).....((....)).))).(....)..)))..))))))))..)))))).......(((((....))))).. ( -44.80)
>consensus
AAUUUGGUAGGUUACACUUAGCCAAAAUAUUAGUUCCGAGGCCUGCACAUCGUAUGGAAACCAGGCAGGAUAUAAUAGCUUAUGUCCACCGCCGAAAAGAACUGAUGCUAUAGCCGACA
...(((((............)))))...((((((((....(((((....((.....))...))))).((((((((....))))))))...........))))))))((....))..... (-24.21 = -23.47 +  -0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:38 2006