Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,921,386 – 11,921,492 |
Length | 106 |
Max. P | 0.992465 |
Location | 11,921,386 – 11,921,492 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 82.08 |
Mean single sequence MFE | -24.75 |
Consensus MFE | -15.49 |
Energy contribution | -19.68 |
Covariance contribution | 4.19 |
Combinations/Pair | 1.07 |
Mean z-score | -3.26 |
Structure conservation index | 0.63 |
SVM decision value | 2.33 |
SVM RNA-class probability | 0.992465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11921386 106 + 22407834 AAUAACUGUUUCGAACAAAUGCAAUGUUUACCAAGUUCAUGGGACUAAAAAUAAGUGCAUGGUAUUUGUUUAAAUGCCAUGCAUUUACCUCAAUGACAUUUGCAUA ..................((((((((((.....((((.....)))).....((((((((((((((((....)))))))))))))))).......)))).)))))). ( -30.00) >DroSec_CAF1 140764 106 + 1 AAUAAUAGUUUCGAACAAAUGCAAUGUUUACCAAGUUCAUGGGACUUAAAAUAAGUGUAUGGUAUUUGUUUAAAUGCCAUGCAUUUACCUUAAUGACAUUUGCAUA ..................((((((((((....(((((.....)))))....((((((((((((((((....)))))))))))))))).......)))).)))))). ( -28.90) >DroSim_CAF1 107282 106 + 1 AAUAAUAGUUUCGAACGAAUGCAAUGUUUACCAAGUUCAUGGGACUAAAAAUAAGUCCAUGGUAUUUUUUUAAAUGCCAUGCAUUUACCUUAAUGACAUUUGCAUA ..................((((((((((......((..((((((((.......)))))(((((((((....))))))))).)))..))......)))).)))))). ( -25.60) >DroYak_CAF1 110041 85 + 1 AAUU--CGUUUUGAACAAAUGCAAUUUUUACCUAGUUCAUGGAACACAA-------------------UUUCAUUGCCAUGCAUUUACCUUAAUGGCAUUUGCAUA ....--............((((((..........((((...))))....-------------------......((((((............)))))).)))))). ( -14.50) >consensus AAUAAUAGUUUCGAACAAAUGCAAUGUUUACCAAGUUCAUGGGACUAAAAAUAAGUGCAUGGUAUUUGUUUAAAUGCCAUGCAUUUACCUUAAUGACAUUUGCAUA ..................((((((((((..((........)).........((((((((((((((((....)))))))))))))))).......)))).)))))). (-15.49 = -19.68 + 4.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:33 2006