Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,235,442 – 1,235,562 |
Length | 120 |
Max. P | 0.722405 |
Location | 1,235,442 – 1,235,562 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.94 |
Mean single sequence MFE | -30.65 |
Consensus MFE | -27.84 |
Energy contribution | -28.27 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -1.83 |
Structure conservation index | 0.91 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1235442 120 - 22407834 AACUAAAAAUAAAUGUUGCUCGAACGCAUGGCCACAGAAAUUAUUGCGGUUUCCAUCGAACUACAGAGGGAAAGUCCUUGCCAAAGGACAUUAAACAUUGAUGCCAGCCUUGGCCAAAUA ................(((......)))(((((((((......))).((((..((((((.((....)).....((((((....))))))........))))))..)))).)))))).... ( -28.00) >DroSec_CAF1 12772 120 - 1 GACUAAAAAUAAAUGUUGCUCGAACGCAUGGCCACAGAAAUUAUUGCGGUUUCCAUCGAACUGCAGAGGAAAAGUCCUUGCCAAAGGACAUUAAACAUUGAUGCCAGCCUUGGCCAAAUA ................(((......)))(((((...........((((((((.....))))))))((((....((((((....))))))........(((....)))))))))))).... ( -31.40) >DroSim_CAF1 8555 120 - 1 GACUAAAAAUAAAUGUUGCUCGAACGCAUGGCCACAGAAAUUAUUGCGGUUUCCAUCGAACUGCAGAGGGAAAGUCCUUGCCAAAGGACAUUAAACAUUGAUGCCAGCCUUGGCCAAAUA ................(((......)))(((((...........((((((((.....))))))))((((....((((((....))))))........(((....)))))))))))).... ( -31.60) >DroYak_CAF1 8858 120 - 1 AACUAAAAAUAAAUGUUGCUCGAACGCAUGGCCACAGAAAUUAUUGUGGUUUCCAUCGAACAGCCGGGGGAAAGUCCUUGCCAAAGGACAUUAAACAUUGAUGCCAGCCUUGGCCAAAUA ................((.((((......((((((((......))))))))....)))).))(((((((....((((((....))))))........(((....))))))))))...... ( -31.60) >consensus AACUAAAAAUAAAUGUUGCUCGAACGCAUGGCCACAGAAAUUAUUGCGGUUUCCAUCGAACUGCAGAGGGAAAGUCCUUGCCAAAGGACAUUAAACAUUGAUGCCAGCCUUGGCCAAAUA ................(((......)))(((((...........((((((((.....))))))))((((....((((((....))))))........(((....)))))))))))).... (-27.84 = -28.27 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:34 2006