Locus 4139

Sequence ID 2L_DroMel_CAF1
Location 11,920,457 – 11,920,553
Length 96
Max. P 0.642341
window6530

overview

Window 0

Location 11,920,457 – 11,920,553
Length 96
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 85.86
Mean single sequence MFE -25.86
Consensus MFE -18.44
Energy contribution -18.80
Covariance contribution 0.36
Combinations/Pair 1.18
Mean z-score -1.79
Structure conservation index 0.71
SVM decision value 0.23
SVM RNA-class probability 0.642341
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11920457 96 + 22407834
GCCAUGGUAG-GAGUGUGUGUGUGUGUGUCUUCGACAAUACAUAUUUAUCUGCAGAAAUCUGCAACCUUCUGGUCACAUUUAAGUGCUGUGGAUGGA
.((((((((.-((((((((((((((.((((...)))))))))))......(((((....)))))(((....))))))))))...))))))))..... ( -31.70)
>DroSec_CAF1 139823 96 + 1
GUCAUGGUAG-GAGUGUUUGUGUGUGUGUCCUUGACAAUACAUAUUUACCUGCAGAAAUCUGCAACCUUCUGGUCACAUUUAAGUGCUGUGGAAGUA
.((((((((.-((((((.(((((((.((((...)))))))))))......(((((....)))))(((....))).))))))...))))))))..... ( -26.20)
>DroSim_CAF1 106343 92 + 1
GUCAUGGUAG-GAGUG----UGUGUGUGUCUUUGACAAUACAUAUGUAUCUGCAGAAAUCUGCAACCUUCUGGUCACAUUUAAGUGCUGUGGAAGUA
.((((((((.-(((((----((((((((((...))).)))))........(((((....)))))(((....))))))))))...))))))))..... ( -25.80)
>DroEre_CAF1 111139 88 + 1
GCCAUGUCAA-GAAU--------GUGAGUCUUUGACAAUACAUAUUUAUCUGCGGAAAUCUGCAACCUUCUGGCCACAUUUAAGUGCUGUGGAAGGA
....((((((-..((--------....))..)))))).............(((((....))))).(((((((((.((......)))))..)))))). ( -22.60)
>DroYak_CAF1 109074 89 + 1
GCCAUGGCAUGGAAU--------GUAAGUCUUUGACAAUACAUAUUUAUCUGCAGAAAUCUGCAACCUUUUGGUCACAUUUAAGUGCAGUGGAAGGA
.((((.((((.((((--------((..(((...)))..............(((((....)))))(((....))).))))))..)))).))))..... ( -23.00)
>consensus
GCCAUGGUAG_GAGUG____UGUGUGUGUCUUUGACAAUACAUAUUUAUCUGCAGAAAUCUGCAACCUUCUGGUCACAUUUAAGUGCUGUGGAAGGA
.((((((((..(((((.......(((((((...))).)))).........(((((....)))))(((....)))..)))))...))))))))..... (-18.44 = -18.80 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:32 2006