Locus 4138

Sequence ID 2L_DroMel_CAF1
Location 11,920,222 – 11,920,315
Length 93
Max. P 0.518823
window6529

overview

Window 9

Location 11,920,222 – 11,920,315
Length 93
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 71.72
Mean single sequence MFE -12.20
Consensus MFE 0.00
Energy contribution 0.00
Covariance contribution 0.00
Combinations/Pair nan
Mean z-score -1.40
Structure conservation index -0.00
SVM decision value -0.03
SVM RNA-class probability 0.518823
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11920222 93 - 22407834
CCA-AAUUACAAAACCU-----------------UGUCUACAUAU-UUUUGUACCCUUGUCAACAAAUAGUAAACAAAUCAAGCAA--------ACUGAAAAGCAAAAUAAAUAAAAAUC
...-............(-----------------(((.(((.(((-(((((.((....))))).)))))))).)))).........--------.((....))................. (  -6.30)
>DroSec_CAF1 139588 98 - 1
UUU-UAUCGCAAAAACU------------GGUUUUGUCUACAUAU-UUUUGUACCCUUGUCAACAAAUAGUAAACAAAUCAGGCAA--------ACUGAAAAGCAAAAUAAAUAAAAGUC
...-....((.......------------...(((((.(((.(((-(((((.((....))))).)))))))).)))))((((....--------.))))...))................ ( -13.50)
>DroSim_CAF1 106107 98 - 1
UUU-AAUCGCAAAAACU------------GGUUUCGUCUACAUAU-UUUUGUACCCUUGUCAACAAAUAGAAAACAAAUCAGGCAA--------ACUGAAAAGCAAAAUAAAUAAAAACC
...-....((......(------------(.(((((..((((...-...))))..)(((....)))...)))).))..((((....--------.))))...))................ ( -11.50)
>DroEre_CAF1 110797 108 - 1
UUAAAGACACAAUAACCUAUUGCUUAUUGGCU--UGUAUCCAUAU-UUUUUAACCCUUGUCAACAAAUAUUGUACAAAUGGG-CAA--------GCUGAAAAGCAAAAUCAAUAAAAAUC
...................((((((.(..(((--(((..((((..-..........(((((((......))).)))))))))-)))--------))..).)))))).............. ( -21.40)
>DroYak_CAF1 108762 114 - 1
UCAAAGACACAAAAGCUU----CCGAUUUGCU--UGCAUCCACAUAUUUUCAACCCUUGUCAACAAAUAUUCUACAAAUCAGACAAUAAAUAUUCCACAAAAGCAAAAUAAACAAGAAUC
..................----....((((((--(........((((((.......(((((....................))))).)))))).......)))))))............. (  -8.31)
>consensus
UUA_AAUCACAAAAACU____________GCU__UGUCUACAUAU_UUUUGUACCCUUGUCAACAAAUAGUAAACAAAUCAGGCAA________ACUGAAAAGCAAAAUAAAUAAAAAUC
........................................................................................................................ (  0.00 =   0.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:29 2006