Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,915,550 – 11,915,641 |
Length | 91 |
Max. P | 0.550387 |
Location | 11,915,550 – 11,915,641 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 84.36 |
Mean single sequence MFE | -32.85 |
Consensus MFE | -23.68 |
Energy contribution | -24.52 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.16 |
Mean z-score | -1.99 |
Structure conservation index | 0.72 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550387 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11915550 91 - 22407834 CCAG---GUAAAGUGGAGUGCCUCCGA--GAAGGUGCCCUCUUCAAAGGGAAGGAAUCCCACACGUCCACA-GUGGCUUGAAAGAGUGUUGGUGGUG- ....---...(((.((.(..(((....--..)))..))).)))....((((.....))))......((((.-...((((....))))....))))..- ( -26.20) >DroSec_CAF1 134908 91 - 1 CCAG---GUAAAGUGGAGUGCCUCCGA--GAGGGUGCCCUCUUCAAAGGGAAGGAAUUCCACACGUCCACA-GUGGCUCGAAAGAGUGUUAGUGGUG- ....---.....(((((((.(((((((--((((....)))))).....)).))).)))))))....((((.-...((((....))))....))))..- ( -36.00) >DroSim_CAF1 101429 91 - 1 CCAG---GUAAAGUGGAGUGCCUCCGA--GAGGGUGCCCUCUUCAAAGGGAAGGAAUUCCACACGUCCACA-GUGGCUCGAUAGAGUGUUGGUGGUG- ....---.....(((((((.(((((((--((((....)))))).....)).))).)))))))....((((.-...((((....))))....))))..- ( -34.10) >DroEre_CAF1 106225 92 - 1 CCAG---GAAAAGUGGAGUGCCUCCGA--GAGGGUGCCCUCUUCAAAGGGAAGGAAUUCCACACGUCCACA-GUGGCUCGCAAGAGUGCUGGUGGUGU ((((---((...(((((((.(((((((--((((....)))))).....)).))).)))))))...))).((-(((.(((....)))))))).)))... ( -41.10) >DroYak_CAF1 103870 92 - 1 CCCG---GAAAAGUGGAGUGCCUCCGA--GAGGGCGCCCUCUUCAAAGGAAAGGAAUUCCACACGUCCACA-GUGGCUCGAAGGAGUGGUGGUGGUGU ....---.....(((((((.(((((((--((((....))))))....)))..)).)))))))(((.((((.-.(.((((....)))).)..))))))) ( -38.10) >DroAna_CAF1 117177 98 - 1 AAAAAAAAAAAAGUAGGAUGAAUCCAAAGGAGAGUGCCCUCUUCAGCGGCAAGGAAUUCCACACGUCCACAUGUGGCAGAAAGGAGUGCAAGUGUACA ......................(((...((((((....)))))).((.....((....)).(((((....))))))).....)))((((....)))). ( -21.60) >consensus CCAG___GAAAAGUGGAGUGCCUCCGA__GAGGGUGCCCUCUUCAAAGGGAAGGAAUUCCACACGUCCACA_GUGGCUCGAAAGAGUGUUGGUGGUG_ ............(((((((.(((((....(((((....)))))....))..))).)))))))....((((.....((((....))))....))))... (-23.68 = -24.52 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:28 2006