Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,910,793 – 11,910,888 |
Length | 95 |
Max. P | 0.688898 |
Location | 11,910,793 – 11,910,888 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 81.61 |
Mean single sequence MFE | -21.52 |
Consensus MFE | -12.95 |
Energy contribution | -14.07 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.14 |
Structure conservation index | 0.60 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688898 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11910793 95 - 22407834 CAUUGC-CAUUUAAGCCUACCAGAUGGUUUUAAACGGCUUAUUGUAUUGGCCCGCAUUCUUUUCUCUUCAUUAUUGGCUGUCACUAAUGACAGCUU ....((-((..((((((.(((....))).......))))))......))))........................((((((((....)))))))). ( -23.40) >DroPse_CAF1 99986 83 - 1 CAUGUCCUGUUUCUGCCGGCGAAAGGGUUUUAAAUA----------AUUAGCUGCUUCC---CCACUUCAUUAUCGCCUGUCAUUAUUGACAGCUU ..............((.((((((((((.........----------.............---)).))).....)))))(((((....))))))).. ( -13.15) >DroSec_CAF1 130211 95 - 1 CAUUGC-CAUUUAAGCCUACCAGAUGGUUUUAAACGGCUUAUUGUAUUGGCCCGCAUUCUUUUCUCUUUAUUAUUGGCUGUCACUACUGACAGCAU ....((-((..((((((.(((....))).......))))))......)))).........................(((((((....))))))).. ( -23.30) >DroSim_CAF1 96338 95 - 1 CAUUGC-CAUUUAAGCCUACCAGAUGGUUUUAAACGGCUUAUUGUAUUGGCCCGCAUUCUUUUCUCUUUAUUAUUGGCUGUCACUACUGACAGCUU ....((-((..((((((.(((....))).......))))))......))))........................((((((((....)))))))). ( -23.50) >DroEre_CAF1 101600 95 - 1 CAUUCG-CAUUUAAGCCUGCCAGAUGGUUUUCAAAGGCUUAUAGUAUGGGCCCGCAUUCUUUUCUCUUUAUUAUUGGCUGUCACUACUGACAGCUU .....(-(....(((((........))))).....(((((((...))))))).))....................((((((((....)))))))). ( -23.30) >DroYak_CAF1 98960 95 - 1 CAUUGC-CAUUUAAGCCCACCAGAUGGUUUUAAAAGGCUUAUUGUAUUGGGCUGCCUUCUUUUCUCUUUAUUAUUGGCUGUCACUACUGACAGCUU ......-......((((((...((((((((....)))).))))....))))))......................((((((((....)))))))). ( -22.50) >consensus CAUUGC_CAUUUAAGCCUACCAGAUGGUUUUAAACGGCUUAUUGUAUUGGCCCGCAUUCUUUUCUCUUUAUUAUUGGCUGUCACUACUGACAGCUU ...........((((((.(((....))).......))))))...................................(((((((....))))))).. (-12.95 = -14.07 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:27 2006