Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,905,942 – 11,906,032 |
Length | 90 |
Max. P | 0.500000 |
Location | 11,905,942 – 11,906,032 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -16.62 |
Consensus MFE | -16.36 |
Energy contribution | -16.25 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -0.61 |
Structure conservation index | 0.98 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11905942 90 - 22407834 CCGCCCUGUGGGCGUGAGCGAAAUGAUGAGACAAAUGAAUGAGAAUUUAAUAGUAAAGGCAAAUAAAAGCUGAGCAACUCAAGUCAAGGA ((((((...))))..........(((((((.....(((((....)))))...((...(((........)))..))..))))..))).)). ( -16.80) >DroSec_CAF1 125474 90 - 1 CCGCCCUGUGGGCGUGAGCGAAAUGAUGAGACAAAUGAAUGAGAAUUUAAUAGUAAAGGCAAAUAAAAGCUGAGCAACUCAAGUCAAGGA ((((((...))))..........(((((((.....(((((....)))))...((...(((........)))..))..))))..))).)). ( -16.80) >DroSim_CAF1 91601 90 - 1 CCGCCCUGUGGGCGUGAGCGAAAUGAUGAGACAAAUGAAUGAGAAUUUAAUAGUAAAGGCAAAUAAAAGCUGAACAACUCAAGUCAAGGA ((((((...))))..........(((((((.....(((((....)))))...((...(((........)))..))..))))..))).)). ( -16.50) >DroEre_CAF1 96784 90 - 1 CCGCCCUGUGGGCGUGAGCGCAAUGAUGAGACAAAUGAAUGAGAAUUUAAUAGUAAAGGCAAAUAAAAGCUGAGCAACUCAAGUCGAGGA ....(((.((.((....)).))....((((.....(((((....)))))...((...(((........)))..))..)))).....))). ( -18.20) >DroYak_CAF1 93669 90 - 1 CCGCCCUGUGGGCGUGAGCGAAGUGAUGAGACAAAUGAAUGAGAAUUUAAUAGUAAAGGCAAAUAAAAGCUGAGCAACUCAAGUCAAGGA ((((((...))))..........(((((((.....(((((....)))))...((...(((........)))..))..))))..))).)). ( -16.70) >DroAna_CAF1 107309 90 - 1 CCGCCCCGUGGGCGUGAGCGAAAUGAUGAGACAAAUGAAUGAGAAUAUAAUAGUAAAGGCAAAUAAAAGCUGAGCAACUCAAGUCAAGGA ((((((...))))..........(((((((.((......))...........((...(((........)))..))..))))..))).)). ( -14.70) >consensus CCGCCCUGUGGGCGUGAGCGAAAUGAUGAGACAAAUGAAUGAGAAUUUAAUAGUAAAGGCAAAUAAAAGCUGAGCAACUCAAGUCAAGGA ((((((...))))..........(((((((.....(((((....)))))...((...(((........)))..))..))))..))).)). (-16.36 = -16.25 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:26 2006