Locus 4131

Sequence ID 2L_DroMel_CAF1
Location 11,872,778 – 11,872,868
Length 90
Max. P 0.508435
window6518

overview

Window 8

Location 11,872,778 – 11,872,868
Length 90
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 79.94
Mean single sequence MFE -20.80
Consensus MFE -15.76
Energy contribution -15.62
Covariance contribution -0.14
Combinations/Pair 1.08
Mean z-score -1.00
Structure conservation index 0.76
SVM decision value -0.05
SVM RNA-class probability 0.508435
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11872778 90 + 22407834
UCGCCUAGAGUUUU--AUCCAAACAACAAAUGAUAGAUGUGAUCACC---GCACAGUGGGAUCGAUUUCAUGUAC-CGACCACUGUGCCA----AUUUUC
(((((((..((((.--...........))))..)))..)))).....---(((((((((..(((...........-))))))))))))..----...... ( -20.10)
>DroSec_CAF1 95700 90 + 1
UCGCCUAGAGUUUU--ACCCAAACAAAAAAUGAUACAUGUGAUCACC---GCACAGUGGGAUCGAUUUCAUGUGC-CGACCACUGUGCCA----AUUUUC
((((.((..(((((--..........)))))..))...)))).....---(((((((((..(((...........-))))))))))))..----...... ( -18.90)
>DroSim_CAF1 61188 90 + 1
UCGCCUAGAGUUUU--ACCCAAACAAAAAUUGAUACAUGUGAUCACC---GCACAGUGGGAUCGAUUUCAUGUGC-CGACCACUGUGCCA----AUUUUC
.........((((.--....)))).(((((((.((((.(((.((...---(((((.((..(....)..)))))))-.)).))))))).))----))))). ( -19.90)
>DroEre_CAF1 66608 88 + 1
UCGCCUAGAGUUUU--GCCUAAC-GA-AAACGAUAGAUUUGAUCGCC---GCACAGUGGGAUCGAUUUCAUGUGC-CGACCACUGUGCCA----AUUUUC
....(((..(((((--.......-.)-))))..)))...........---(((((((((..(((...........-))))))))))))..----...... ( -22.00)
>DroYak_CAF1 62864 88 + 1
UCGCCCAGAGUUUU--AACUAAC-AA-AUACGAUAGAUUUGAUCACC---GCACAGUGGAAUCGAUUUCAUGUGC-CGACCACUGUGCCG----AUUUUC
(((...........--......(-((-((.(....))))))......---(((((((((..(((...........-))))))))))))))----)..... ( -19.80)
>DroPer_CAF1 67354 97 + 1
UCGUCUCGCGUAUCUCUUUCAAU---UACAUCAUGGAUUCGAUCACCGUCGCACAGUGGAAUCGAUAGCCUUCGCUUGACCACUGUGCCGCACCGCUUUC
.......(((.(((...((((..---.......))))...)))....((.(((((((((..(((..(((....))))))))))))))).))..))).... ( -24.10)
>consensus
UCGCCUAGAGUUUU__ACCCAAA_AA_AAAUGAUAGAUGUGAUCACC___GCACAGUGGGAUCGAUUUCAUGUGC_CGACCACUGUGCCA____AUUUUC
..................................................(((((((((..(((............))))))))))))............ (-15.76 = -15.62 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:19 2006