Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,234,969 – 1,235,168 |
Length | 199 |
Max. P | 0.930256 |
Location | 1,234,969 – 1,235,088 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.98 |
Mean single sequence MFE | -30.55 |
Consensus MFE | -27.05 |
Energy contribution | -28.05 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.24 |
Structure conservation index | 0.89 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.930256 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1234969 119 - 22407834 GAGGAAAAACAUCUGAUCCUGAAGGAA-AAAAUCCGGGAUUUGGGUGAAAUGUUAAAUGGGCGACAUUUACACAUUCGUUACCCAGGUCCGAGCCCAAUUUGCUGACAAACAAAUUACAC .((((...........))))...(((.-....))).(((((((((((((((((((((((.....)))))).)))))..))))))))))))......((((((........)))))).... ( -32.10) >DroSec_CAF1 12288 119 - 1 GAAUAAAAACCUCUGAUCAUGAAGGAA-AAAAUCCGGGAUUUGGGUGAAAUGUUAAAUGGGCGACAUUUACACAUUCGUUACCCAGGUCCGAGCCCAAUUUGCUGACAAACAAAUUACAC ..........(((..........(((.-....))).(((((((((((((((((((((((.....)))))).)))))..)))))))))))))))...((((((........)))))).... ( -32.10) >DroSim_CAF1 8105 119 - 1 GAAGAAAAACCUCUGAUCCUGAAGGAA-AAAAUCCGGGAUUUGGGGGAAAUGUUAAAUGGGCGACAUUUACACAUUCGUUACCCAGGUCCGAGCCCAAUUUGCUGACAAACAAAUUACAC ..........(((...(((....))).-........(((((((((..((((((((((((.....)))))).)))))..)..))))))))))))...((((((........)))))).... ( -28.60) >DroYak_CAF1 8339 120 - 1 AAAGAAAAACCUCUGAUCCUGAGGCAAAAAAAUCCGGGAUUUUGGUGAAAUGUUAAAUGGGCAACAUUUACACAUUCGUUACCCAGGUCCGAGCCCAAUUUGUUGACAAACAAAUUACAC .........((((.......))))............((((((.((((((((((((((((.....)))))).)))))..))))).))))))......((((((((....)))))))).... ( -29.40) >consensus GAAGAAAAACCUCUGAUCCUGAAGGAA_AAAAUCCGGGAUUUGGGUGAAAUGUUAAAUGGGCGACAUUUACACAUUCGUUACCCAGGUCCGAGCCCAAUUUGCUGACAAACAAAUUACAC ..........(((..........(((......))).(((((((((((((((((((((((.....)))))).)))))..)))))))))))))))...((((((........)))))).... (-27.05 = -28.05 + 1.00)
Location | 1,235,049 – 1,235,168 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.05 |
Mean single sequence MFE | -36.01 |
Consensus MFE | -28.35 |
Energy contribution | -28.73 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.09 |
Mean z-score | -1.85 |
Structure conservation index | 0.79 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.702838 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1235049 119 + 22407834 AUCCCGGAUUUU-UUCCUUCAGGAUCAGAUGUUUUUCCUCUCUUUGACAUUGUCUAAUGAGUAAAUUAGGCUGGUGAUGCGGGUAGGUGGGUCCGUUCGGACUCCAUCAUGGGAACCAUU .(((((......-..(((.((..((((((((((............))))))(((((((......)))))))))))..)).)))..(((((((((....)))).))))).)))))...... ( -37.20) >DroSec_CAF1 12368 119 + 1 AUCCCGGAUUUU-UUCCUUCAUGAUCAGAGGUUUUUAUUCUCUGUGACAUUGUCUAAUGAGUAAAUUAGGCUGGUGAUGAGGGUAGGUGGGUCCGUUUGGAUUCCAUCAUCGGAAACAUU ...((((.....-..(((((((.(((((.....(((((((.....(((...)))....))))))).....))))).)))))))..(((((((((....))).)))))).))))....... ( -38.40) >DroSim_CAF1 8185 119 + 1 AUCCCGGAUUUU-UUCCUUCAGGAUCAGAGGUUUUUCUUCUCUGCGACAUUGUCUAAUGAGUAAAUUAGGCUGGUGAUGCGGGUAGGUGGGUCCGUUCGGAUUCCAUCAUGGGAAACAUU .((((((((...-.(((....((((((((((.....)))))(((((.(((((((((((......))))))).)))).))))).......)))))....)))....))).)))))...... ( -38.60) >DroYak_CAF1 8419 120 + 1 AUCCCGGAUUUUUUUGCCUCAGGAUCAGAGGUUUUUCUUUUCUUUGACAUUGUCUAAUGAGUAAAUUAGGCUGGUGAUGCGGGUAGGUGGCUCCAUUCAGAUUCCAUCAUCGGAACCAUU .(((.(((.......(((((.......))))).......))).........(((((((......))))))).(((((((.((((.((((....))))...))))))))))))))...... ( -29.84) >consensus AUCCCGGAUUUU_UUCCUUCAGGAUCAGAGGUUUUUCUUCUCUGUGACAUUGUCUAAUGAGUAAAUUAGGCUGGUGAUGCGGGUAGGUGGGUCCGUUCGGAUUCCAUCAUCGGAAACAUU ..((((((......)))....(.((((((((.......)))))...((...(((((((......)))))))..))))).))))..(((((((((....)))).)))))...(....)... (-28.35 = -28.73 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:33 2006