Locus 4129

Sequence ID 2L_DroMel_CAF1
Location 11,855,274 – 11,855,371
Length 97
Max. P 0.977764
window6516

overview

Window 6

Location 11,855,274 – 11,855,371
Length 97
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 78.89
Mean single sequence MFE -17.80
Consensus MFE -13.07
Energy contribution -13.02
Covariance contribution -0.05
Combinations/Pair 1.21
Mean z-score -3.05
Structure conservation index 0.73
SVM decision value 1.80
SVM RNA-class probability 0.977764
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11855274 97 - 22407834
CAGCCU-UUCUGUUAGAGCCUUCCCCUUACCUGUCUGCUACAAUUUGGCUAACUAGCACAAAGGCUUAAACACACACACACACAUACAUACCAACACA
.(((((-((.((((((((((..........................))))..)))))).)))))))................................ ( -19.47)
>DroPse_CAF1 45312 80 - 1
CUGCCUAUUCUGUCAGAGAUUUUCC--AACAUGUUUGCUGCAAUUUGGCUAACUAGCACAGAGGCUUAAGCACACAUUUGA----------------G
(((.(......).)))........(--((.((((.((((....(((((((....))).))))......)))).))))))).----------------. ( -15.50)
>DroSec_CAF1 78542 87 - 1
CAGCCU-UUCUGUUAGAGCCUUCCCCUUACCUGUCUGCUACAAUUUGGCUAACUAGCACAAAGGCUUAAACACACACACAC----------CCACACA
.(((((-((.((((((((((..........................))))..)))))).)))))))...............----------....... ( -19.47)
>DroSim_CAF1 43870 79 - 1
CAGCCU-UUCUGUUAGAGCCUUCCCCUUACCUGUCUGCUACAAUUUGGCUAACUAGCACAAAGGCUUAAACACACAC------------------ACA
.(((((-((.((((((((((..........................))))..)))))).)))))))...........------------------... ( -19.47)
>DroEre_CAF1 48989 78 - 1
CAGCCU--CCUGUCAGAGCUUUCCCCUUGCCAGUCUGCUACAAUUUGGCUAACUGGCACAAAGGCC--AACACACACA----------------CACA
..((((--..(((..(((.......)))((((((..((((.....))))..))))))))).)))).--..........----------------.... ( -20.10)
>DroYak_CAF1 45138 80 - 1
CAGCCU--CCUGCCAGAGCUUUGCCCUAACCUGUCUGCUACAAUUUGGCUAACUAGCACAAAGGCUUAAACACACACA----------------CACA
.(((((--..(((.((.((...)).)).....((..((((.....))))..))..)))...)))))............----------------.... ( -12.80)
>consensus
CAGCCU_UUCUGUCAGAGCCUUCCCCUUACCUGUCUGCUACAAUUUGGCUAACUAGCACAAAGGCUUAAACACACACA________________CACA
..((((....((((((((((..........................))))..))))))...))))................................. (-13.07 = -13.02 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:17 2006