Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,851,821 – 11,851,940 |
Length | 119 |
Max. P | 0.853557 |
Location | 11,851,821 – 11,851,940 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.07 |
Mean single sequence MFE | -38.25 |
Consensus MFE | -19.84 |
Energy contribution | -19.48 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.35 |
Mean z-score | -2.20 |
Structure conservation index | 0.52 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11851821 119 + 22407834 -CACAGGUUUUUCCACUGCCGCCAAAACCUGGCUGCCUGUCCACCCGAACUACCUCGAGCUCAACCUUGAGGCCCAGAAGGUGGCCAACAGGAGCCAUUACCAGGUCUACAAGGAUCUGC -...(((((((..(......)..)))))))((((.((((((((((.......(((((((......))))))).......)))))...))))))))).....(((((((....))))))). ( -43.24) >DroPse_CAF1 41825 120 + 1 UUCCAGGCUUCUCCGAGGCCUCCAAGACCUGGCUGCCUGUGCAUCCCAACUAUCCGGAACUCAAUUUGGAGGCCCAGAAGGCAGCCCCCAAGAGCCACUACAAGGUCUAUAAGGCGCUCA .....((.....))(((((((...((((((((((((((((........))..((.((..(((......)))..)).))))))))))....((.....))...))))))...)))).))). ( -40.40) >DroEre_CAF1 45579 119 + 1 -CACAGGUUUCUCCACUGCCGCUAAAACCUGGCUGCCUGUCCACCCGAACUACCUGCAACUCAACCUGGAGGCCCAGAAGGCGGCUAACAGGAGCCACUACUUGGUCUACAAGGACCUAC -....(((((((.....((((((.....((((..(((..((((.......................)))))))))))..))))))....))))))).......(((((....)))))... ( -35.30) >DroYak_CAF1 41649 119 + 1 -CACAGGUUUUUCCACGGCCACGAAAACCUGGCUGCCUGUGCACCCGAACUACCUGGAACUGAACCUGGAGGCCCAGAAGGCGGCCAAAAGGAGCCAUUACCAGGUGUACAAGGACCUAC -...((((.......((((((........))))))((((((((((.(......((((..((........))..))))..(((..((....)).))).....).))))))).))))))).. ( -40.30) >DroAna_CAF1 48277 120 + 1 UUCUAGGAUUCUCCGAUUCCUCAAAGACCUGGCUUCCAGUUCAUCCCAAUUACCUAGAACUGAACUUGGAGGCCCAAAAGGCGGCCAACAAAAGCCAUUAUAAGGUCUACACCGAUUUAA ....((((.((...)).))))...(((((((((((((((((((.................))))).)))))))).....(((...........)))......))))))............ ( -32.93) >DroPer_CAF1 44301 120 + 1 UUCCAGGCUUCUCCGAGGCCUCCAAGACCUGGCUGCCAGUGCAUCCCAAUUAUCCGGAGCUCAAUUUGGAGGCCCAGAAAGCAGCCCCCAAGAGCCACUACAAGGUCUAUAAGGCGCUCA ......((((.((.(.((((((((((..((((...)))).((.(((.........)))))....))))))))))).)))))).(((....(((.((.......)))))....)))..... ( -37.30) >consensus _CACAGGUUUCUCCAAGGCCUCCAAAACCUGGCUGCCUGUGCACCCCAACUACCUGGAACUCAACCUGGAGGCCCAGAAGGCGGCCAACAAGAGCCACUACAAGGUCUACAAGGACCUAA .....(((.........))).......(((((((((((((........))...............((((....)))).)))))))).......(((.......))).....)))...... (-19.84 = -19.48 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:16 2006