| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,846,378 – 11,846,477 |
| Length | 99 |
| Max. P | 0.557407 |
| Location | 11,846,378 – 11,846,477 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 86.35 |
| Mean single sequence MFE | -29.48 |
| Consensus MFE | -19.46 |
| Energy contribution | -20.85 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.43 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.557407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11846378 99 + 22407834 ACCCUUUUCAUGUCGC-CGUGAAAAGCAAGAAAAUUAUGCCGACUCGACUC-GCUUACACGUGAAGAUUUUUGCACAUAUUUGUGCAACAAUUUUCAAUAU ...(((((((((....-)))))))))............((.((......))-)).......((((((((.(((((((....))))))).)))))))).... ( -25.00) >DroPse_CAF1 35601 100 + 1 ACCCUUUUCAUGUCGAGCGGCGAAAGUAGCUGAAUUAUGCCAAGUUUUCCACGGUU-CAUGUGAAGAUUUCUGCACAUAUUUGUGCACCAUUUUCCAUUUU ....(((((((((..(((.((....)).)))((((..((..........))..)))-))))))))))....((((((....)))))).............. ( -22.90) >DroSec_CAF1 69684 100 + 1 ACCCUUUUCAUGUCGC-CGUGAAAAGCGGGAAAAUUAUGCCGACUCUGCUUGGCUUACACGUGAAGAUUUCUGCACAUAUUUGUGCAAAAAUUUUCAAUAU .(((((((((((....-))))))))).)).........(((((......))))).......(((((((((.((((((....)))))).))))))))).... ( -33.90) >DroSim_CAF1 35028 100 + 1 ACCCUUUUCAUGUCGC-CGUGAAAAGCGGCAAAAUUAUGCCGACUCUGCUUGGCUUACACGUGAAGAUUUCUGCACAUAUUUGUGCAACAAUUUUCAAUAU .(((((((((((....-))))))))).)).........(((((......))))).......((((((((..((((((....))))))..)))))))).... ( -31.20) >DroEre_CAF1 35497 99 + 1 ACCCUUUUCAUGUUGC-CGUGAAAAGCGGGAAAAUUAUGCCGACUCUGCUC-GCUUACACGUGCAGAUUUCUGCACAUAUUUGUGGGCGAAUUUUCAAUAU .(((((((((((....-))))))))).))(((((((.((((...(((((.(-(......)).)))))......((((....)))))))))))))))..... ( -35.60) >DroYak_CAF1 36203 99 + 1 ACCCUUUUCAUGUCGC-CGUGAAAAGCGGGAAAAUUAUGCCGACUCUGCGC-GCUUACACGUGAAGAUUUCUGCACAUAUUUGUGCAAAAAUUCUCAAUAU .(((((((((((....-))))))))).)).........((((......)).-)).......(((..((((.((((((....)))))).))))..))).... ( -28.30) >consensus ACCCUUUUCAUGUCGC_CGUGAAAAGCGGGAAAAUUAUGCCGACUCUGCUC_GCUUACACGUGAAGAUUUCUGCACAUAUUUGUGCAACAAUUUUCAAUAU .(((((((((((.....))))))))).))................................((((((((..((((((....))))))..)))))))).... (-19.46 = -20.85 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:15 2006