| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,844,620 – 11,844,712 |
| Length | 92 |
| Max. P | 0.739216 |
| Location | 11,844,620 – 11,844,712 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 81.47 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -16.10 |
| Energy contribution | -15.38 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.739216 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11844620 92 + 22407834 -UUGGGAUUUGAUUUAUUAACUCUGCACAGUGGCUUGACUAAUUGAAUCCCAAUACGUGCCUACGCGCAACAUCCAAAUUGGAUGCAAACAAA- -((((((((..(((..((((..(........)..))))..)))..))))))))...((((....))))..(((((.....)))))........- ( -27.40) >DroSim_CAF1 33243 92 + 1 -UUGGGAUUUGAUUUAUUAACUCUGCACAGUGGCUUGACUAAUUGAAUCCCAAUACGUGCCUACGCGCAACAUCCAAAUUGGGUGCAAACAAA- -((((((((..(((..((((..(........)..))))..)))..))))))))...((((....))))..(((((.....)))))........- ( -26.80) >DroEre_CAF1 33722 91 + 1 -UUGGGAUUUGAUUUAUUAACUCUGCACAGUGGCUUGACUAAUUGAAUCCCAAUACGUGCGU-CGCAGAACAUCCAAAUUGGGUCCAAACAAA- -...(((((..((((......((((((((((......))).((((.....))))......))-.)))))......))))..))))).......- ( -19.50) >DroWil_CAF1 55050 88 + 1 -UUAAGAUUUGAUUUAUUAACUGCGU---GUUGUUUAGCUAAUUGAAUUUCAAUACGCGCGACAGAAAUCCGUCAAAAUUUGG-GCAAACAAA- -....(((..(((((......(((((---((((.....(.....).....)))))))))......))))).)))....((((.-.....))))- ( -16.20) >DroYak_CAF1 34426 91 + 1 -UUGGGAUUUGAUUUAUUAACUCUGCACACUGGCUUGACUAAUUGAAUCCCAAUACGUGCGU-CGCUCAACAUCCAAAUUGGGUGCAAACAAG- -((((((((..(((..((((..(........)..))))..)))..))))))))...((..(.-(((((((........))))))))..))...- ( -24.30) >DroAna_CAF1 40285 92 + 1 CCUGGGCUGUGAUUUAUUAACUCGACACGGAGGCUUGACUAAUUGAAUUUCAAUACGUGCGA-CAC-UAACAUCAGAAUUUGGUGCAAACACAA .......((((..........(((.((((.((......)).((((.....)))).)))))))-(((-(((.........))))))....)))). ( -16.00) >consensus _UUGGGAUUUGAUUUAUUAACUCUGCACAGUGGCUUGACUAAUUGAAUCCCAAUACGUGCGU_CGCACAACAUCCAAAUUGGGUGCAAACAAA_ .(((((((((((((..((((..(........)..))))..))))))))))))).................(((((.....)))))......... (-16.10 = -15.38 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:14 2006