Locus 4124

Sequence ID 2L_DroMel_CAF1
Location 11,836,872 – 11,836,964
Length 92
Max. P 0.938755
window6511

overview

Window 1

Location 11,836,872 – 11,836,964
Length 92
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 75.53
Mean single sequence MFE -22.72
Consensus MFE -12.90
Energy contribution -12.78
Covariance contribution -0.12
Combinations/Pair 1.16
Mean z-score -2.05
Structure conservation index 0.57
SVM decision value 1.27
SVM RNA-class probability 0.938755
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11836872 92 - 22407834
-------AAAUAUAUUUAU-----------------GAUUUGCACUGCAGUAGAUGGAAACCUAAACUGUCUUAGUGUAUAAAAAAGAUUGAUGGUUGGCCAUCGAUCAUGUUACC
-------.(((((......-----------------....(((((((((((..(.(....).)..)))))...)))))).......(((((((((....))))))))))))))... ( -26.30)
>DroSec_CAF1 59904 90 - 1
---------GUGUAUAUAU-----------------GAUUAGCACAGCAGUAGAUGGAAACCUAAAGUAUCUUAGUGUAUAAAAAAGAUUGAUGGUGGGCCAUCGAUCAUGUUACC
---------..(((.((((-----------------((((.((...))....(((((..(((......(((((..(.....)..)))))....)))...)))))))))))))))). ( -20.80)
>DroSim_CAF1 25318 90 - 1
---------GUGUAUAUAU-----------------GAUUAGCACAGCAGUAGAUGGAAACCUAAAGUAUCUUAGUGUAUAAAAAAGAUUGAUGGUGGGCCAUCGAUCAUGUUACC
---------..(((.((((-----------------((((.((...))....(((((..(((......(((((..(.....)..)))))....)))...)))))))))))))))). ( -20.80)
>DroEre_CAF1 25741 115 - 1
UUGUUCCAAAUAUAUUUAUGCUAGAUAACAUUAUUUUA-UGUUACGUCAGUAGGUGGAAACCUAAACUAUCUAAGUGUAUAAAAAAGAUUGAUGGUGGGCCAUCGAUCAUGUUACC
..((..((.(((((((((.(.(((.((((((......)-)))))......(((((....)))))..))).))))))))))......(((((((((....))))))))).))..)). ( -31.80)
>DroYak_CAF1 27046 94 - 1
UUAUUCCAAAUAUAU---------------------UA-CAUCACAUCACUAGGUGUAAACUUGAACUAUCUUAGCGUAUAAAAAAGAUUGAUGGUGGCCGAUCGAUCAUGUUACC
........(((((.(---------------------((-((((.........)))))))...........................(((((((.(....).))))))))))))... ( -13.90)
>consensus
_______AAAUAUAUAUAU_________________GAUUAGCACAGCAGUAGAUGGAAACCUAAACUAUCUUAGUGUAUAAAAAAGAUUGAUGGUGGGCCAUCGAUCAUGUUACC
..........(((((........................................(....)((((......)))).))))).....(((((((((....)))))))))........ (-12.90 = -12.78 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:12 2006